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Accueil > Départements > Microbiologie > Christophe SOLA : Infection Génétique Evolution des Pathogènes Emergents

Christophe Sola résumé

Pr. Christophe SOLA

Pharm.D, Ph.D
ResearcherID : A-7992-2016
https://orcid.org/0000-0003-4672-214


Former Fellow of Institut Pasteur-Ancien Eleve de l’Institut Pasteur
Former Resident of Lyon’s Hospitals-Ancien Interne des Hôpitaux de Lyon



November 2019
Detailed Publications Activities : 1989-2019



Download the résumé as PDF

PERSONAL

Name : SOLA
Firstname : Christophe, Noël
Grade : PR 2
Etablissement : Université Paris Sud-11
Numéro de Dossier : 84682
Date of Birth : 26 Décembre, 1960 in La Tronche
Section CNU 65
Nationality : French
Family Status, Kids : Single, two kids (d.o.b. : 30th June 1995 Lorenzo, 28th January 1999, Carla)
Current Home address : 78 rue Cambronne, 75015 Paris
Phone : 33 (0) 1 69 15 46 48
Fax : 33 (0) 1 69 15 66 78
E-mail : christophe.sola i2bc.paris-saclay.fr
E-mail-ups : christophe.sola u-psud.fr
E-mail-perso : christophe_noel_sola yahoo.fr

CURRENT POSITION

Professor, Head of the Infection Genetics Emerging Pathogen Evolution Research Team, within the Institute for Integrative Cell Biology (UMR9198, CEA-CNRS-UPSay_UPSud) Founder of the « Beamedex® » start–up company (www.beamedex.com), scientific consultant for Beamedex®.

Title : Full Professor, Microbiology, University of Paris-Sud (since Sept. 1, 2007)
Head of Research team in Institut de biologie Intégrative de la Cellule, (I2BC, UMR9198) Team « Infection, Genetics, Emerging Pathogens Evolution » (IGEPE) since 1er september 2007. Staff= 5-9 people including 2 permanent (1 Professor and Assistant Professor) and 4-5 contracts (PhD fellows, Post-doct, student) ; Founder of the Beamedex genotyping and reagents services platform

First Administrative link : Université Paris-Sud 11
Second Administrative link : CEA-CNRS-UPsay (UMR9198)
Laboratory  : Institut de Biologie Intégrative de la cellule, UMR9198, Microbiology Dept.
Passed Administrative link : From sept 2007- until Sept 2011 Unité de Génétique Mycobactérienne, Institut Pasteur, Paris

EDUCATION, DEGREES

1977-1979 Lycée Champollion, Grenoble (Bac C mention AB, 1977), Classes préparatoires aux Ecoles Nationales Vétérinaires (Bac D mention AB, 1978)
1979-1984 Faculty of Pharmacy, University of Grenoble 1
1984 Pharmacist (University of Grenoble I), option : Medical Biology
1985 Diplôme D’Etudes Supérieures Specialisées (DESS Biologie Médicale), module d’Hematologie, Université Lyon 1 1985. Niveau : module de Biochimie (non validé).
1986 Master degree (DEA) Cellular and Molecular biology, University Paris 6 , Pr. Paul Cohen.
1988 Pharmaceutical Sciences Doctor (D. Pharm), Université Grenoble I
1991 Philosophiae Doctor, (PhD), Biochemistry, option : Cellular and Molecular biology University of Paris 6, nov. 1991. Dissertation Title : "A cell and molecular approach of blood pressure regulation system ; works on renin, atrial natriuretic and endothelin genes".
2001 Habilitation to Direct Research/ Habilitation à Diriger des Recherches (HDR) Université of Lesser Antillas and French Guyana, 30th March 2001. "De la génétique moléculaire du sytème rénine-angiotensine à celle des populations de bacilles tuberculeux, ou de l’évolution comme constante" (from renin-angiotensin system genetics to tubercle bacilli genetics or evolution as a constant)

SCIENTIFIC PRODUCTIVITY INDICES

- 148 articles total in PubMed, with « Sola C and (Mycobacterium or Salmonella or Legionella or ANF or Renin or tuberculosis or CRISPR) as keywords on Nov. 13th 2019.
- 159 refered articles in ISI Web of Knowledge with Topic (Mycobacterium or Salmonella or Legionella or ANF or Renin or tuberculosis or CRISPR) and Author=(Sola C) as keywords on Nov. 13th 2019.
- Hirsch Index (H-index)= 38 computed on ISI Web of science on Nov 13th 2019

extracted from ISI Web of Science, Citation Activity Report, C. Sola, done on Nov 13th 2019

TITLES, MEMBERSHIPS

- Former Resident of Lyon’s Hospitals/Ancien Interne des Hôpitaux de Lyon, 1984-1985
- Former Fellow of the Pasteur Institute/Ancien Elève de l’Institut Pasteur, Paris, 1985-1988
- Former advisor of the town council of Meylan/Ancien Conseiller municipal de la ville de Meylan, 1983-1986, in charge of : general administration, youth affairs sport, environment.
- Excellency Chair in Microbiology/Lauréat de la Chaire d’Excellence en Microbiologie, Université Paris-Sud, 2007.
- Member of the Society for Ethnopharmacology/Membre de la Société d’Ethnopharmacologie, 1989-1990
- Member of the European Society for Mycobacteriology/Membre de la Société Européenne de Mycobactériologie since/depuis 1996
- Member of the American Society for Microbiology/Membre de la Société Américaine de Microbiologie (ASM) (between 1996-1999 and since 2008)
- Member of the European Clinical Microbiology and Infectious Diseases Society (ESCMID) 2006-2010.
- Member of the Association of Former fellows of the Institut Pasteur since 2013.

- Academic Editor : PLoS ONE since december 2011
- Reviewer : J.Clin.Microbiol., PLoS ONE, Int. J. Tuber. Lung. Dis, Infect. Genet. Evol, Lancet Infect. Dis., Bioinformatics, Genome Res…Clin. Microbiol. Infect.
- Reviewer : Ministry of Research, Italy, Kazkahstan, Wellcome Trust Fundation, University of Stellenbosch South Africa.

SCIENTIFIC AWARDS, INVITED PROFESSOR, HONOURS

- Louis D. International Network of Pasteur Institutes, 2000 (Collective Price)
- Excellency chair in Microbiology, Université Paris-Sud, 2007 (Personal Price)
- Award of the French National Academy of Medicine 2013 (Prix du Dr. L. Deschiens).
- Invited Professor : University of São Paulo, Faculty of Medicine, Ribeirão Preto, Brazil, July-Sept. 2017

FORMER POSITIONS (time, duration, place of work, position, department)

- Apr-Oct. 1984 : 6 months, Grenoble Hospital, Resident-like position/Faisant Fonction d’Interne, Nuclear Medicine
- Nov. 1984-Oct. 1985 : 1 year, Lyon’s Hospitals, University of Lyon, Interne/Resident : Hématology, Virology
Emergency Biochemistry (night and week-end duties)
- Nov. 1985-Feb. 1988 : 2,5 years, Assistant de Recherche/Research Assistant, "Unité de Génétique et Biochimie du Développement", Institut Pasteur, Pr. François Rougeon
- Feb. 1988-Jun. 1989 : 1,5 years, Assistant de Recherche/Research Assistant, "Unité de Pathobiologie", Institut de Recherche Clinique de Montréal (IRCM), Québec, Canada, Pr. Marc Cantin
- Nov. 1989-Dec. 1990 : 1 year (13 months), Ingénieur de Recherche/Research Engineer, groupe Limagrain, Bioinitiatives, Chappes 63, France
- Nov. 1991-Apr. 1994 : 2,5 years, Assistant de Recherches Cliniques/Clinical Research Assistant, Groupe Boehringer-Mannheim, Mannheim, Germany (filiale française, Paris)
- May–Oct. 1994 : 6 month, Chef de Projet/Project Leader, Parexel Corporation, Boston, USA (bureau de Paris)
- Nov. 1994-Dec. 1998 : 4 years, Chercheur Contractuel/Senior Scientist (under short-term contracts), Institut Pasteur, Institut Pasteur de Guadeloupe, Unité de la Tuberculose et des Mycobactéries.
- Jan. 1999-Aug. 2006 : 8 years, Chargé de Recherche/Senior Scientist, (permanent position) Institut Pasteur, détaché à l’Institut Pasteur de Guadeloupe, Unité de la Tuberculose et Mycobactéries
- Sept. 2006-Aug. 2007 : 1 year, Chargé de Recherche/Senior Scientist Institut Pasteur, Unité de Génétique Mycobactérienne, Paris

GRANTS (since settlement of IGEPE team, 2007) and VALORIZATION ACTIVITIES

- Excellency Chair in Microbiology/Lauréat de la Chaire d’Excellence Microbiologie, Université Paris-Sud 2007, 170 k€
- Investment Ile de France Region/Lauréat Investissement Région Ile de France Domaine Intérêt Majeur –Maladies Infectieuses 2009, 50 k€, 2013-2014, 50k€
- Private and Public Contract Research/Contrats de Recherche Privés et subventions diverses, 2007-2010 : contrats Gilson, Luminex Corp., Fondation Mérieux, >80 k€
- Délégation Générale Armement/Ministry of Defence (DGA) REI-ITODYS, 2010-2012 ; 53k€
- European Development Clinical Trials Partnership (EDCTP) 2013-2015, 115k€ with UK, Spain, Nigeria, Ethiopia
- Beads4Med genotyping services : 180k€ (income 2009-2013)
- Founder of the Beamedex® SAS company, January 2015
- UE Horizon 2020 (Pierre et Marie Incoming fellowship, benefit : Dr. Stefan Panaiotov, Oct.2015-Sept.2017)
- Member of the COST Action 16107 : Euroxanth Integrating science on Xanthomonadaceae for integrated plant disease management in Europe (2016-2020)
- Partnership Hubert Curien (NAPATA) with Sudan, 2019 “Improving Tuberculosis control and evolutionary history knowledge in Sudan by integrated molecular epidemiology and patient-centered approach
- Co-Founder and partner of Beamedex®, created Dec 1st 2014, University Paris-Sud, bât 400, F-91400, Orsay. Income 2015-2018 : 65 k€/year

MANAGEMENT EXPERIENCE

- Former R&D Staff from Pharmaceutical and Biotechnological Industries 1989-1994 :
French, German, American companies respectively : Limagrain (1989-1990), Boehringer Mannheim (1991-1994) Parexel Corporation (1994).
- Manager of the IGEPE Team since 2007, Management of International R&D Public Health and Microbiology programs. R&D consultant, Beamedex®.

Scientific Direction
- 9 PhD co-directions at « Université des Antilles et de la Guyane » between 1994 and 2006 (Microbiology, Bioinformatics), 3 PhD direction in Université Paris-Sud 11 since 2007, numerous Master students, Licence, and Post-Docs.

- PhD direction and co-direction (with Dr. Nalin Rastogi, Head, Mycobacteria and TB Unit, Institut Pasteur) (with estimated percentage of management)
1. Anne DEVALLOIS : Université d’Aix-Marseille : “Diagnostic rapide et Epidémiologie des infections à mycobactéries : développement et mise en place de méthodes moléculaires dans la région Antilles-Guyane.12 Nov.
1997”. Rapid diagnosis and epidemiology of mycobacterial infections : development and molecular methods in the Antilles-Guyan region (50%).
2. Lionel HORGEN : Université de Marne La vallée “Etude des mycobactéries dans la région Antilles-Guyane
épidémiologie moléculaire, résistance aux antibiotiques et interactions bactéries-macrophages. 1 Dec. 1998”.(50%)
3. Eric LEGRAND : Université Paris VI “Développement et Mise en Place de méthodes moléculaires pour le diagnostic et l’épidémiologie des mycobactéries dans la Caraïbe”, 2001 (50%).
4. Ingrid FILLIOL : Université Grenoble I : “Evaluation de différents marqueurs moléculaires pour l’épidémiologie et la phylogénie de la tuberculose. 10 Sept., 2002. Evaluation of different molecular markers for the epidemiology and the phylogeny of tuberculosis (50%).

- since 2001 (since habilitation to direct research)
5. Séverine FERDINAND : Université Paris VII “Contribution à l’Etude de l’épidémiologie et de la génétique évolutive de la TB en milieux insulaires. 22 Juillet 2004” Contribution to the study of epidemiology and evolutionary genetics of TB in insular systems (50%).
6. Georges VALETUDIE (with Dr. M. G. Desachy), Université des Antilles et de la Guyane. “ Nouvelles méthodes en data-mining et extraction de connaissances à partir de données : applications au complexe M. tuberculosis”, 15 Septembre 2006 -co-direction (Bioinformatics). New methods in data mining and extraction of knowledge from data : applications to the M. tuberculosis complex (50%).
7. Karine BRUDEY : Université des Antilles et de la Guyane. Etude de la biodiversité globale des génotypes de Mycobacterium tuberculosis : applications épidémiologiques, 12 Decembre, 2005.” Study of the overall biodiversity of the genotypes of Mycobacterium tuberculosis : epidemiological applications (80%).
8. Thierry ZOZIO : Université des Antilles et de la Guyane. “Etude de la génétique des populations de bacilles tuberculeux dans la Caraïbe : applications épidémiologiques et phylogénétiques” : (2009) Study of the population genetics of the TB bacteria in the Caribbean : epidemiological and phylogenetic applications (50%).
9. Julie MILLET : Université des Antilles et de la Guyane “Etude de la diversité génétique moléculaire des populations de bacilles tuberculeux en milieux insulaires, l’exemple du Japon” (2010).(30%).
10. Participation à l’encadrement d’une thèse avec l’IRD (Institut de Recherche pour le Développement) Vanina GUERNIER Université d’Orléans. (co-direction Université d’Orléans M. JM. Fotsing et de l’IRD Montpellier, Dr. J. F. Guegan) “Epidémiologie de la Tuberculose sur l’île de Cayenne, en Guyane. Analyse des facteurs de risque et d’étude des dynamiques spatio-temporelles”, Janvier 2006 (25%).
11. Université Paris 7 (direction : Pr. Brigitte Gicquel, Institut Pasteur : Participation à l’encadrement de M. Tiago DOS VULTOS, thèse soutenue en novembre 2008 (25%).

- PhD direction, co-direction and supervision since 2007 (with percentage of management)
12. Jian ZHANG : Université Paris-Sud-11 : Ecole doctorale : “Gènes Génomes Cellules”. “Epidémiologie moléculaire et diversité génétique d’agents pathogènes bactériens humains : mise en œuvre de nouvelles techniques de génotypage multiplexées et à haut débit sur Mycobacterium tuberculosis et Salmonella enterica (soutenance : 15 Septembre 2010, mention très honorable). Molecular Epidemiology and genetic diversity of human bacterial pathogens : implementation of new techniques of multiplexed genotyping on Mycobacterium tuberculosis and Salmonella enterica.(100%)
13. Michel GOMGNIMBOU : Université Paris-Sud-11 Ecole doctorale : “Gènes Génomes Cellules”. Début de thèse : Oct. 2010. Financement Fondation Mérieux et CNRS. Sujet : Nouvelles méthodes de diagnostic, de contrôle et de surveillance de la tuberculose à Bacilles tuberculeux sensibles ou multirésistants dans des pays à forte co-infection au VIH. New methods of diagnosis, control and surveillance of sensitive or multidrug-resistant TB tuberculosis in countries with high HIV co-infection. Defended on 27th Sept. 2013 (100%)
14. Noël RATOVONIRINA : Université Paris-Sud-11 Ecole Doctorale : “Gènes Génomes Cellules”. Début de thèse : Oct. 2011. Co-direction with Dr. V. Rasolofo-Razanamparany, Institut Pasteur of Madagascar and University of Antananarivo. Development of innovative molecular methods for TB early diagnostics , defence : scheduled Dec. 11th 2017.(50%, co-direction with V. Rasolofo)
15. Lizania SPINASSE-BORGES (MD) : (in collaboration with Federal University of Rio de Janeiro : Nov. 2011. Study of Resistant Hypertension by cohort analysis of CYP2D6 genes polymorphisms. defence : 29 November 2013 (30%, co-direction with Dr. Salles and Dr. Suffy, Brazil)
16. Memona YASMIN : in collaboration with National Center for Biotechnology and Engineering, Faisalabad, Pakistan : Feb. 2012. Characterization of MDR-TB clinical isolates in Pakistan.(30%) (co-direction with Pakistan)
17. Nayanne DANTAS (MD) : in collaboration with Federal University of Minas Gerais, Pr. S. Spindola de Miranda., Molecular epidemiology of drug-resistant tuberculosis in Minas Gerais, Brazil : defence : Feb. 2015 (30%) (co-direction with Pr. S. Spindola, Brazil).
18. Emilyn COSTA-CONCEICAO : in collaboration between Evandro Chagas Institute, Pr. Karla Lima Federal University of Pará, UFPa, Belém, Brazil, and Federal University of Rio de Janeiro, Dr. Rafael Silva Duarte, PhD, Head, Laboratory of Mycobacteria. Molecular evolution and epidemiology of Tuberculosis in Para, Brazil : defence : April. 2016 (30%)(co-direction with Pr. K. Lima, Brazil).
19. Bernice KLOTOE : Université Paris-Saclay Developpement de nouvelles méthodes pour la surveillance des souches « Beijing » de Mycobacterium tuberculosis et applications dans les républiques de l’ex-URSS, defence : 17th October 2018. (50%, co-direction with Dr. G. Refregier).
20. Muhammad RABIU SAHAL : Université Paris-Saclay start : December 2019, « Exploitation de données et phylodynamique à partir de génomes du complexe Mycobacterium tuberculosis ». Expected defence : December 2022. (50%, co-direction with Dr. G. Refregier).

PUBLICATIONS (1989-2019)

1989
1. Anand-Srivastava MB, Thibault G, Sola C, Fon E, Ballak M, Charbonneau C, Haile-Meskel H, Garcia R, Genest J, Cantin M. Hypertension. 1989 Jun ;13(6 Pt 2):789-98. Atrial natriuretic factor in Purkinje fibers of rabbit heart.
2. Sola C, Tronik D, Dreyfus M, Babinet C, Rougeon F. Oncogene Res. 1989 ;5(2):149-53. Renin-promoter SV40 large T-antigen transgenes induce tumors irrespective of normal cellular expression of renin genes.
3. Ekker M, Sola C, Rougeon F. FEBS Lett. 1989 Sep 25 ;255(2):241-7. The activity of the mouse renin promoter in cells that do not normally produce renin is dependent upon the presence of a functional enhancer.

1990
4. Sola C, Thibault G, Haile-Meskel H, Anand-Srivastava MB, Garcia R, Cantin M. J Histochem Cytochem. 1990 Aug ;38(8):1123-35. Atrial natriuretic factor in the vena cava and sinus node

1996
5. Devallois A, Picardeau M, Goh KS, Sola C, Vincent V, Rastogi N.. J Clin Microbiol. 1996 Nov ;34(11):2756-9. Comparative evaluation of PCR and commercial DNA probes for detection and identification to species level of Mycobacterium avium and Mycobacterium intracellulare
6. Sola C, Devallois A, Goh KS, Legrand E, Rastogi N. Curr Microbiol. 1996 Dec ;33(6):352-8. Molecular characterization of Mycobacterium avium complex isolates from Caribbean patients by DT1/DT6-PCR, nonradioactive Southern hybridization, and the Accuprobe system.

1997
7. Sola C, Horgen L, Goh KS, Rastogi N. Molecular fingerprinting of Mycobacterium tuberculosis on a Caribbean island with IS6110 and DRr probes. Journal of Clinical Microbiology. 1997 ;35(4):843-6.

1998
8. Devallois A, Horgen L, Sola C, Rastogi N. Pathol Biol (Paris). 1998 Oct ;46(8):625-36. Review. French. [Molecular typing of mycobacteria]
9. Horgen L, Sola C, Devallois A, Goh KS, Rastogi N. FEMS Immunol Med Microbiol. 1998 Jul ;21(3):203-12. Follow up of Mycobacterium tuberculosis transmission in the French West Indies by IS6110-DNA fingerprinting and DR-based spoligotyping.
10. Sola C, Horgen L, Devallois A, Rastogi N. Res Microbiol. 1998 May ;149(5):349-60. Combined numerical analysis based on the molecular description of Mycobacterium tuberculosis by four repetitive sequence-based DNA typing systems.
11. Sola C, Horgen L, Maïsetti J, Devallois A, Goh KS, Rastogi N. J Clin Microbiol. 1998 Apr ;36(4):1122-4. Spoligotyping followed by double-repetitive-element PCR as rapid alternative to IS6110 fingerprinting for epidemiological studies of tuberculosis.

1999
12. Filliol I, Sola C, Legrand E, Rastogi N. Bull Soc Pathol Exot. 1999 Dec ;92(5):292-8. French. [Genotypic diversity of Mycobacterium tuberculosis in the Guiana-Antilles region].
13. Sola C, Devallois A, Horgen L, Maïsetti J, Filliol I, Legrand E, Rastogi N. Emerg Infect Dis. 1999 May-Jun ;5(3):404-14. Tuberculosis in the Caribbean : using spacer oligonucleotide typing to understand strain origin and transmission.

2000
14. Filliol I, Ferdinand S, Negroni L, Sola C, Rastogi N. J Clin Microbiol. 2000 Jul ;38(7):2520-4. Molecular typing of Mycobacterium tuberculosis based on variable number of tandem DNA repeats used alone and in association with spoligotyping.
15. Filliol I, Sola C, Rastogi N. J Clin Microbiol. 2000 Mar ;38(3):1231-4. Detection of a previously unamplified spacer within the DR locus of Mycobacterium tuberculosis : epidemiological implications.
16. Legrand E, Goh KS, Sola C, Rastogi N. Mol Cell Probes. 2000 Dec ;14(6):355-63. Description of a novel Mycobacterium simiae allelic variant isolated from Caribbean AIDS patients by PCR-restriction enzyme analysis and sequencing of hsp65 gene
17. Legrand E, Sola C, Rastogi N. Bull Soc Pathol Exot. 2000 Jul ;93(3):182-92. Review. French. [Mycobacterium avium-intracellulare complex : phenotypic and genotypic markers and the molecular basis for interspecies transmission].
18. Legrand E, Sola C, Verdol B, Rastogi N. Res Microbiol. 2000 May ;151(4):271-83. Genetic diversity of mycobacterium avium recovered from AIDS patients in the caribbean as studied by a consensus IS1245-RFLP method and pulsed-field gel electrophoresis.
19. Sola C, Filliol I, Legrand E, Rastogi N. Pathol Biol (Paris). 2000 Dec ;48(10):921-32. Review. French. [Recent developments of spoligotyping as applied to the study of epidemiology, biodiversity and molecular phylogeny of the Mycobacterium tuberculosis complex].

2001
20. Dale JW, Brittain D, Cataldi AA, Cousins D, Crawford JT, Driscoll J, Heersma H, Lillebaek T, Quitugua T, Rastogi N, Skuce RA, Sola C, Van Soolingen D, Vincent V. Int J Tuberc Lung Dis. 2001 Mar ;5(3):216-9. Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex : recommendations for standardised nomenclature.
21. Goh KS, Legrand E, Sola C, Rastogi N. J Clin Microbiol. 2001 Oct ;39(10):3705-8. Rapid differentiation of "Mycobacterium canettii" from other Mycobacterium tuberculosis complex organisms by PCR-restriction analysis of the hsp65 gene.
22. Legrand E, Filliol I, Sola C, Rastogi N. J Clin Microbiol. 2001 Apr ;39(4):1595-9. Use of spoligotyping to study the evolution of the direct repeat locus by IS6110 transposition in Mycobacterium tuberculosis.
23. Rastogi N, Legrand E, Sola C. Rev Sci Tech. 2001 Apr ;20(1):21-54. Review. The mycobacteria : an introduction to nomenclature and pathogenesis.
24. Sola C, Ferdinand S, Mammina C, Nastasi A, Rastogi N. J Clin Microbiol. 2001 Apr ;39(4):1559-65. Genetic diversity of Mycobacterium tuberculosis in Sicily based on spoligotyping and variable number of tandem DNA repeats and comparison with a spoligotyping database for population-based analysis.
25. Sola C, Filliol I, Gutierrez MC, Mokrousov I, Vincent V, Rastogi N. Emerg Infect Dis. 2001 May-Jun ;7(3):390-6. Spoligotype database of Mycobacterium tuberculosis : biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives.
26. Sola C, Filliol I, Legrand E, Mokrousov I, Rastogi N. J Mol Evol. 2001 Dec ;53(6):680-9. Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades
27. Viana-Niero C, Gutierrez C, Sola C, Filliol I, Boulahbal F, Vincent V, Rastogi N. J Clin Microbiol. 2001 Jan ;39(1):57-65. Genetic diversity of Mycobacterium africanum clinical isolates based on IS6110-restriction fragment length polymorphism analysis, spoligotyping, and variable number of tandem DNA repeats.

2002
28. Filliol I, Driscoll JR, Van Soolingen D, Kreiswirth BN, Kremer K, Valétudie G, Anh DD, Barlow R, Banerjee D, Bifani PJ, Brudey K, Cataldi A, Cooksey RC, Cousins DV, Dale JW, Dellagostin OA, Drobniewski F, Engelmann G, Ferdinand S, Gascoyne-Binzi D, Gordon M, Gutierrez MC, Haas WH, Heersma H, Källenius G, Kassa-Kelembho E, Koivula T, Ly HM, Makristathis A, Mammina C, Martin G, Moström P, Mokrousov I, Narbonne V, Narvskaya O, Nastasi A, Niobe-Eyangoh SN, Pape JW, Rasolofo-Razanamparany V, Ridell M, Rossetti ML, Stauffer F, Suffys PN, Takiff H, Texier-Maugein J, Vincent V, De Waard JH, Sola C, Rastogi N. Global distribution of Mycobacterium tuberculosis spoligotypes. Emerging Infectious Diseases 2002 Nov ;8(11):1347-9
29. Filliol I, Ferdinand S, Sola C, Thonnon J, Rastogi N. Res Microbiol. 2002 Mar ;153(2):81-8. Spoligotyping and IS6110-RFLP typing of Mycobacterium tuberculosis from French Guiana : a comparison of results with international databases underlines interregional transmission from neighboring countries.
30. Mokrousov I, Filliol I, Legrand E, Sola C, Otten T, Vyshnevskaya E, Limeschenko E, Vyshnevskiy B, Narvskaya O, Rastogi N. Res Microbiol. 2002 May ;153(4):213-9. ecular characterization of multiple-drug-resistant Mycobacterium tuberculosis isolates from northwestern Russia and analysis of rifampin resistance using RNA/RNA mismatch analysis as compared to the line probe assay and sequencing of the rpoB gene.
31. Moström P, Gordon M, Sola C, Ridell M, Rastogi N. Clin Microbiol Infect. 2002 Nov ;8(11):694-704. Review. Methods used in the molecular epidemiology of tuberculosis.
32. Sebban M, Mokrousov I, Rastogi N, Sola C. Bioinformatics. 2002 Feb ;18(2):235-43. A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.

2003
33. Brudey K, Filliol I, Sola C, Bébéar C, Elia-Pasquet S, Texier-Maugein J, Rastogi N. Pathol Biol (Paris). 2003 Jul ;51(5):282-9. French. Erratum in : Pathol Biol (Paris). 2003 Dec ;51(10):591. [Molecular characterization and biodiversity of Mycobacterium tuberculosis in the Antilles-Guiana region and comparative analysis in a metropolitan region, Aquitaine].
34. Dale JW, Al-Ghusein H, Al-Hashmi S, Butcher P, Dickens AL, Drobniewski F, Forbes KJ, Gillespie SH, Lamprecht D, McHugh TD, Pitman R, Rastogi N, Smith AT, Sola C, Yesilkaya H. J Bacteriol. 2003 Apr ;185(8):2555-62. Evolutionary relationships among strains of Mycobacterium tuberculosis with few copies of IS6110.
35. Ferdinand S, Sola C, Verdol B, Legrand E, Goh KS, Berchel M, Aubéry A, Timothée M, Joseph P, Pape JW, Rastogi N. J Clin Microbiol. 2003 Feb ;41(2):694-702. Molecular characterization and drug resistance patterns of strains of Mycobacterium tuberculosis isolated from patients in an AIDS counseling center in Port-au-Prince, Haiti : a 1-year study.
36. Filliol I, Driscoll JR, van Soolingen D, Kreiswirth BN, Kremer K, Valétudie G, Dang DA, Barlow R, Banerjee D, Bifani PJ, Brudey K, Cataldi A, Cooksey RC, Cousins DV, Dale JW, Dellagostin OA, Drobniewski F, Engelmann G, Ferdinand S, Gascoyne-Binzi D, Gordon M, Gutierrez MC, Haas WH, Heersma H, Kassa-Kelembho E, Ho ML, Makristathis A, Mammina C, Martin G, Moström P, Mokrousov I, Narbonne V, Narvskaya O, Nastasi A, Niobe-Eyangoh SN, Pape JW, Rasolofo-Razanamparany V, Ridell M, Rossetti ML, Stauffer F, Suffys PN, Takiff H, Texier-Maugein J, Vincent V, de Waard JH, Sola C, Rastogi N. J Clin Microbiol. 2003 May ;41(5):1963-70. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study.
37. Mokrousov I, Otten T, Vyazovaya A, Limeschenko E, Filipenko ML, Sola C, Rastogi N, Steklova L, Vyshnevskiy B, Narvskaya O. Eur J Clin Microbiol Infect Dis. 2003 Jun ;22(6):342-8. Epub 2003 Jun 3. PCR-based methodology for detecting multidrug-resistant strains of Mycobacterium tuberculosis Beijing family circulating in Russia.
38. Niobe-Eyangoh SN, Kuaban C, Sorlin P, Cunin P, Thonnon J, Sola C, Rastogi N, Vincent V, Gutierrez MC. J Clin Microbiol. 2003 Jun ;41(6):2547-53. Genetic biodiversity of Mycobacterium tuberculosis complex strains from patients with pulmonary tuberculosis in Cameroon.
39. Puustinen K, Marjamäki M, Rastogi N, Sola C, Filliol I, Ruutu P, Holmström P, Viljanen MK, Soini H. J Clin Microbiol. 2003 Apr ;41(4):1525-8. Characterization of Finnish Mycobacterium tuberculosis isolates by spoligotyping.
40. Sola C, Filliol I, Legrand E, Lesjean S, Locht C, Supply P, Rastogi N. Infect Genet Evol. 2003 Jul ;3(2):125-33. Genotyping of the Mycobacterium tuberculosis complex using MIRUs : association with VNTR and spoligotyping for molecular epidemiology and evolutionary genetics.
41. Sola C, Filliol I, Maïsetti J, Carbonnelle B, Rastogi N. Pathol Biol (Paris). 2003 Feb ;51(1):13-20. French. [Epidemiological study of tuberculosis in the area of Angers, France, as studied by 3 PCR-based fingerprinting methods].
42. Sola C, Rastogi N, Gutierrez MC, Vincent V, Brosch R, Parsons L. J Clin Microbiol. 2003 Mar ;41(3):1345-6 ; author reply 1346-8 Is Mycobacterium africanum subtype II (Uganda I and Uganda II) a genetically well-defined subspecies of the Mycobacterium tuberculosis complex ?
43. Zink AR, Sola C, Reischl U, Grabner W, Rastogi N, Wolf H, Nerlich AG. J Clin Microbiol. 2003 Jan ;41(1):359-67. Characterization of Mycobacterium tuberculosis complex DNAs from Egyptian mummies by spoligotyping.

2004
44. Brudey K, Gordon M, Moström P, Svensson L, Jonsson B, Sola C, Ridell M, Rastogi N. J Clin Microbiol. 2004 Jul ;42(7):3046-51. Molecular epidemiology of Mycobacterium tuberculosis in western Sweden.
45. Brudey K, Gutierrez MC, Vincent V, Parsons LM, Salfinger M, Rastogi N, Sola C. J Clin Microbiol. 2004 Nov ;42(11):5053-7. Mycobacterium africanum genotyping using novel spacer oligonucleotides in the direct repeat locus.
46. Duchêne V, Ferdinand S, Filliol I, Guégan JF, Rastogi N, Sola C. Infect Genet Evol. 2004 Mar ;4(1):5-14. Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region : tree comparative analyse and first appraisal on their phylogeography.
47. Easterbrook PJ, Gibson A, Murad S, Lamprecht D, Ives N, Ferguson A, Lowe O, Mason P, Ndudzo A, Taziwa A, Makombe R, Mbengeranwa L, Sola C, Rastogi N, Drobniewski F. J Clin Microbiol. 2004 Oct ;42(10):4536-44. Erratum in : J Clin Microbiol. 2004 Dec ;42(12):5965. High rates of clustering of strains causing tuberculosis in Harare, Zimbabwe : a molecular epidemiological study.
48. Ferdinand S, Legrand E, Goh KS, Berchel M, Mazzarelli G, Sola C, Tortoli E, Rastogi N. Mol Cell Probes. 2004 Dec ;18(6):399-408. Taxonomic and phylogenetic status of non-tuberculous mycobacteria in a Caribbean setting.
49. Ferdinand S, Valétudie G, Sola C, Rastogi N. Res Microbiol. 2004 Oct ;155(8):647-54. Data mining of Mycobacterium tuberculosis complex genotyping results using mycobacterial interspersed repetitive units validates the clonal structure of spoligotyping-defined families.
50. Sajduda A, Brzostek A, Popławska M, Rastogi N, Sola C, Augustynowicz-Kopeć E, Zwolska Z, Dziadek J, Portaels F. Int J Tuberc Lung Dis. 2004 Dec ;8(12):1448-57. Molecular epidemiology of drug-resistant Mycobacterium tuberculosis strains isolated from patients with pulmonary tuberculosis in Poland : a 1-year study.
51. Singh UB, Suresh N, Bhanu NV, Arora J, Pant H, Sinha S, Aggarwal RC, Singh S, Pande JN, Sola C, Rastogi N, Seth P. Emerg Infect Dis. 2004 Jun ;10(6):1138-42. Predominant tuberculosis spoligotypes, Delhi, India.
52. Streicher EM, Warren RM, Kewley C, Simpson J, Rastogi N, Sola C, van der Spuy GD, van Helden PD, Victor TC. J Clin Microbiol. 2004 Feb ;42(2):891-4. Genotypic and phenotypic characterization of drug-resistant Mycobacterium tuberculosis isolates from rural districts of the Western Cape Province of South Africa.
53. Zink AR, Sola C, Reischl U, Grabner W, Rastogi N, Wolf H, et al. Molecular identification and characterization of Mycobacterium tuberculosis complex in ancient Egyptian mummies. International Journal of Osteoarchaeology. 2004 ;14(5):404-13.

2005
54. Ferdinand S, Sola C, Chanteau S, Ramarokoto H, Rasolonavalona T, Rasolofo-Razanamparany V, Rastogi N. Infect Genet Evol. 2005 Oct ;5(4):340-8. A study of spoligotyping-defined Mycobacterium tuberculosis clades in relation to the origin of peopling and the demographic history in Madagascar.
55. García de Viedma D, Bouza E, Rastogi N, Sola C. J Clin Microbiol. 2005 Apr ;43(4):1797-806. Analysis of Mycobacterium tuberculosis genotypes in Madrid and identification of two new families specific to Spain-related settings.
56. Goh KS, Rastogi N, Berchel M, Huard RC, Sola C. J Clin Microbiol. 2005 Aug ;43(8):4010-4. Molecular evolutionary history of tubercle bacilli assessed by study of the polymorphic nucleotide within the nitrate reductase (narGHJI) operon promoter.
57. Gori A, Esposti AD, Bandera A, Mezzetti M, Sola C, Marchetti G, Ferrario G, Salerno F, Goyal M, Diaz R, Gazzola L, Codecasa L, Penati V, Rastogi N, Moroni M, Franzetti F. Mol Cell Probes. 2005 Aug ;19(4):236-44. Epub 2005 Mar 17. Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains.
58. Kulkarni S, Sola C, Filliol I, Rastogi N, Kadival G. Res Microbiol. 2005 May ;156(4):588-96. Epub 2005 Feb 7. Spoligotyping of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mumbai, India.
59. Lari N, Rindi L, Sola C, Bonanni D, Rastogi N, Tortoli E, Garzelli C. J Clin Microbiol. 2005 Apr ;43(4):1617-24. Genetic diversity, determined on the basis of katG463 and gyrA95 polymorphisms, Spoligotyping, and IS6110 typing, of Mycobacterium tuberculosis complex isolates from Italy.
60. Nicol MP, Sola C, February B, Rastogi N, Steyn L, Wilkinson RJ. J Clin Microbiol. 2005 Nov ;43(11):5779-81. Distribution of strain families of Mycobacterium tuberculosis causing pulmonary and extrapulmonary disease in hospitalized children in Cape Town, South Africa.
61. Sola C, Ferdinand S, Sechi LA, Zanetti S, Martial D, Mammina C, Nastasi A, Fadda G, Rastogi N. Infect Genet Evol. 2005 Mar ;5(2):145-56. Mycobacterium tuberculosis molecular evolution in western Mediterranean Islands of Sicily and Sardinia.
62. Zozio T, Allix C, Gunal S, Saribas Z, Alp A, Durmaz R, Fauville-Dufaux M, Rastogi N, Sola C. BMC Microbiol. 2005 Jul 26 ;5:44. Genotyping of Mycobacterium tuberculosis clinical isolates in two cities of Turkey : description of a new family of genotypes that is phylogeographically specific for Asia Minor.

2006
63. Aristimuño L, Armengol R, Cebollada A, España M, Guilarte A, Lafoz C, Lezcano MA, Revillo MJ, Martín C, Ramírez C, Rastogi N, Rojas J, de Salas AV, Sola C, Samper S. BMC Microbiol. 2006 Oct 10 ;6:90. Molecular characterisation of Mycobacterium tuberculosis isolates in the First National Survey of Anti-tuberculosis Drug Resistance from Venezuela.
64. Brudey K, Driscoll JR, Rigouts L, Prodinger WM, Gori A, Al-Hajoj SA, Allix C, Aristimuño L, Arora J, Baumanis V, Binder L, Cafrune P, Cataldi A, Cheong S, Diel R, Ellermeier C, Evans JT, Fauville-Dufaux M, Ferdinand S, Garcia de Viedma D, Garzelli C, Gazzola L, Gomes HM, Guttierez MC, Hawkey PM, van Helden PD, Kadival GV, Kreiswirth BN, Kremer K, Kubin M, Kulkarni SP, Liens B, Lillebaek T, Ho ML, Martin C, Martin C, Mokrousov I, Narvskaïa O, Ngeow YF, Naumann L, Niemann S, Parwati I, Rahim Z, Rasolofo-Razanamparany V, Rasolonavalona T, Rossetti ML, Rüsch-Gerdes S, Sajduda A, Samper S, Shemyakin IG, Singh UB, Somoskovi A, Skuce RA, van Soolingen D, Streicher EM, Suffys PN, Tortoli E, Tracevska T, Vincent V, Victor TC, Warren RM, Yap SF, Zaman K, Portaels F, Rastogi N, Sola C. BMC Microbiol. 2006 Mar 6 ;6:23 Mycobacterium tuberculosis complex genetic diversity : mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology.
65. Brudey K, Filliol I, Ferdinand S, Guernier V, Duval P, Maubert B, Sola C, Rastogi N. J Clin Microbiol. 2006 Jan ;44(1):183-91. Long-term population-based genotyping study of Mycobacterium tuberculosis complex isolates in the French departments of the Americas.
66. Brudey K, Filliol I, Théodore M, Sola C, Rastogi N. Pathol Biol (Paris). 2006 Feb ;54(1):14-21. French. [Molecular epidemiology of tuberculosis in Guadeloupe from 1994 to 2000].
67. Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, Bobadilla del Valle M, Fyfe J, García-García L, Rastogi N, Sola C, Zozio T, Guerrero MI, León CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendón A, Sifuentes-Osornio J, Ponce de León A, Cave MD, Fleischmann R, Whittam TS, Alland D. J Bacteriol. 2006 Jan ;188(2):759-72. Erratum in : J Bacteriol. 2006 Apr ;188(8):3162-3. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis : insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set.
68. Goh KS, Fabre M, Huard RC, Schmid S, Sola C, Rastogi N. Mol Cell Probes. 2006 Jun-Aug ;20(3-4):182-90. Epub 2006 Mar 6. Study of the gyrB gene polymorphism as a tool to differentiate among Mycobacterium tuberculosis complex subspecies further underlines the older evolutionary age of ’Mycobacterium canettii’.
69. Joseph P, Severe P, Ferdinand S, Goh KS, Sola C, Haas DW, Johnson WD, Rastogi N, Pape JW, Fitzgerald DW. AIDS. 2006 Feb 14 ;20(3):415-8. Multidrug-resistant tuberculosis at an HIV testing center in Haiti.
70. Karboul A, Gey van Pittius NC, Namouchi A, Vincent V, Sola C, Rastogi N, Suffys P, Fabre M, Cataldi A, Huard RC, Kurepina N, Kreiswirth B, Ho JL, Gutierrez MC, Mardassi H. BMC Evol Biol. 2006 Dec 12 ;6:107 Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE_PGRS duplicated gene pair.
71. Rasolofo Razanamparany V, Quirin R, Rapaoliarijaona A, Rakotoaritahina H, Vololonirina EJ, Rasolonavalona T, Ferdinand S, Sola C, Rastogi N, Ramarokoto H, Chanteau S. Vet Microbiol. 2006 Apr 16 ;114(1-2):115-22. Epub 2005 Dec 27. Usefulness of restriction fragment length polymorphism and spoligotyping for epidemiological studies of Mycobacterium bovis in Madagascar : description of new genotypes.
72. Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rüsch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, Bifani P, Kurepina N, Kreiswirth B, Sola C, Rastogi N, Vatin V, Gutierrez MC, Fauville M, Niemann S, Skuce R, Kremer K, Locht C, van Soolingen D. J Clin Microbiol. 2006 Dec ;44(12):4498-510. Epub 2006 Sep 27. Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis.
73. Suresh N, Singh UB, Arora J, Pant H, Seth P, Sola C, Rastogi N, Samantaray JC, Pande JN. Infect Genet Evol. 2006 Nov ;6(6):474-83. Epub 2006 Apr 18. rpoB gene sequencing and spoligotyping of multidrug-resistant Mycobacterium tuberculosis isolates from India.

2007
74. Al-Hajoj SA, Zozio T, Al-Rabiah F, Mohammad V, Al-Nasser M, Sola C, Rastogi N. J Clin Microbiol. 2007 Aug ;45(8):2467-73. Epub 2007 May 16. First insight into the population structure of Mycobacterium tuberculosis in Saudi Arabia.
75. Durmaz R, Zozio T, Gunal S, Yaman A, Cavusoglu C, Guney C, Sola C, Rastogi N. Infect Genet Evol. 2007 Jul ;7(4):513-9. Epub 2007 Mar 30. Erratum in : Infect Genet Evol. 2008 Mar ;8(2):227. Genetic diversity and major spoligotype families of drug-resistant Mycobacterium tuberculosis clinical isolates from different regions of Turkey.
76. Kibiki GS, Mulder B, Dolmans WM, de Beer JL, Boeree M, Sam N, van Soolingen D, Sola C, van der Zanden AG. BMC Microbiol. 2007 May 31 ;7:51. M. tuberculosis genotypic diversity and drug susceptibility pattern in HIV-infected and non-HIV-infected patients in northern Tanzania.
77. Ködmön C, Niemann S, Gutierrez MC, Sola C, Rastogi N, Lukács J, Somoskövi A. Infect Genet Evol. 2007 Sep ;7(5):632-5. Epub 2007 Jun 22. Molecular clues of a microepidemy among homeless tuberculosis patients in Budapest due to a new and local Mycobacterium tuberculosis clade.
78. Lari N, Rindi L, Bonanni D, Rastogi N, Sola C, Tortoli E, Garzelli C. J Clin Microbiol. 2007 Jun ;45(6):1851-7. Epub 2007 Apr 25. Three-year longitudinal study of genotypes of Mycobacterium tuberculosis isolates in Tuscany, Italy.
79. Martín A, Chaves F, Iñigo J, Alonso M, Sola C, Rastogi N, Ruiz Serrano MJ, Palenque E, Bouza E, García de Viedma D. Clin Microbiol Infect. 2007 Dec ;13(12):1210-3. Epub 2007 Sep 7. Molecular, epidemiological and infectivity characterisation of a Mycobacterium tuberculosis strain prevalent in Madrid
80. Millet J, Miyagi-Shiohira C, Yamane N, Sola C, Rastogi N. J Clin Microbiol. 2007 Nov ;45(11):3606-15. Epub 2007 Sep 26. Assessment of mycobacterial interspersed repetitive unit-QUB markers to further discriminate the Beijing genotype in a population-based study of the genetic diversity of Mycobacterium tuberculosis clinical isolates from Okinawa, Ryukyu Islands, Japan.
81. Rahim Z, Zaman K, van der Zanden AG, Möllers MJ, van Soolingen D, Raqib R, Zaman K, Begum V, Rigouts L, Portaels F, Rastogi N, Sola C. J Clin Microbiol. 2007 Nov ;45(11):3791-4. Epub 2007 Sep 5. Assessment of population structure and major circulating phylogeographical clades of Mycobacterium tuberculosis complex in Bangladesh suggests a high prevalence of a specific subclade of ancient M. tuberculosis genotypes.
82. Singh UB, Arora J, Suresh N, Pant H, Rana T, Sola C, Rastogi N, Pande JN. Infect Genet Evol. 2007 Jul ;7(4):441-8. Epub 2007 Jan 16. Genetic biodiversity of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in India.
83. Streicher EM, Victor TC, van der Spuy G, Sola C, Rastogi N, van Helden PD, Warren RM. J Clin Microbiol. 2007 Jan ;45(1):237-40. Epub 2006 Oct 25. Erratum in : J Clin Microbiol. 2007 Sep ;45(9):3149. Spoligotype signatures in the Mycobacterium tuberculosis complex.
84. Aktaş E, Zozio T, Cömert FB, Külah C, Aydin O, Rastogi N, Sola C. Clin Microbiol Infect. 2008 Jan ;14(1):55-9. Epub 2007 Nov 22. A first insight into the genetic diversity and population structure of Mycobacterium tuberculosis in Zonguldak, Turkey.

2008
85. Spoligotypes of Mycobacterium tuberculosis isolates of a high tuberculosis burden aboriginal township in Taiwan. Chuang PC, Liu H, Sola C, Chen YM, Jou R. Infect Genet Evol. 2008 Sep ;8(5):553-7. doi : 10.1016/j.meegid.2008.03.003. Epub 2008 Apr 8.
86. Use of cluster-graphs from spoligotyping data to study genotype similarities and a comparison of three indices to quantify recent tuberculosis transmission among culture positive cases in French Guiana during a eight year period. Guernier V, Sola C, Brudey K, Guégan JF, Rastogi N. BMC Infect Dis. 2008 Apr 14 ;8:46. doi : 10.1186/1471-2334-8-46
87. [Molecular strain typing contribution to epidemiology of tuberculosis in Limousin (1998 to 2006)]. Bezanahary H, Baclet MC, Sola C, Gazaille V, Turlure P, Weinbreck P, Denis F, Martin C. Med Mal Infect. 2008 Jun ;38(6):309-17. doi : 10.1016/j.medmal.2008.02.008. Epub 2008 Apr 18. French
88. Evolution and diversity of clonal bacteria : the paradigm of Mycobacterium tuberculosis. Dos Vultos T, Mestre O, Rauzier J, Golec M, Rastogi N, Rasolofo V, Tonjum T, Sola C, Matic I, Gicquel B. PLoS One. 2008 Feb 6 ;3(2):e1538. doi : 10.1371/journal.pone.0001538.
89. Application of sensitive and specific molecular methods to uncover global dissemination of the major RDRio Sublineage of the Latin American-Mediterranean Mycobacterium tuberculosis spoligotype family.Gibson AL, Huard RC, Gey van Pittius NC, Lazzarini LC, Driscoll J, Kurepina N, Zozio T, Sola C, Spindola SM, Kritski AL, Fitzgerald D, Kremer K, Mardassi H, Chitale P, Brinkworth J, Garcia de Viedma D, Gicquel B, Pape JW, van Soolingen D, Kreiswirth BN, Warren RM, van Helden PD, Rastogi N, Suffys PN, Lapa e Silva J, Ho JL. J Clin Microbiol. 2008 Apr ;46(4):1259-67. doi : 10.1128/JCM.02231-07. Epub 2008 Jan 30
90. A first insight into the genetic diversity and population structure of Mycobacterium tuberculosis in Zonguldak, Turkey. Aktaş E, Zozio T, Cömert FB, Külah C, Aydin O, Rastogi N, Sola C. Clin Microbiol Infect. 2008 Jan ;14(1):55-9. Epub 2007 Nov 22.

2009
91. Tafaj S, Zhang J, Hauck Y, Pourcel C, Hafizi H, Zoraqi G, Sola C. First insight into genetic diversity of the Mycobacterium tuberculosis complex in Albania obtained by multilocus variable-number tandem-repeat analysis and spoligotyping reveals the presence of beijing multidrug-resistant isolates. J Clin Microbiol. 2009 May ;47(5):1581-4. Epub 2009 Mar 11
92. Otlu B, Durmaz R, Gunal S, Sola C, Zozio T, Rastogi N. Beijing/W and major spoligotype families of Mycobacterium tuberculosis strains isolated from tuberculosis patients in Eastern Turkey..New Microbiol. 2009 Jul ;32(3):255-63.

2010
93. Zhang J, Abadia E, Refregier G, Tafaj S, Boschiroli ML, Guillard B, Andremont A, Ruimy R, Sola C Mycobacterium tuberculosis complex CRISPR genotyping : improving efficiency, throughput and discriminative power of ’spoligotyping’ with new spacers and a microbead-based hybridization assay. J Med Microbiol. 2010 Mar ;59(Pt 3):285-94. Epub 2009 Dec 3
94. Valcheva V, Mokrousov I, Panaiotov S, Bachiiska E, Zozio T, Sola C, Markova N, Rastogi N.Bulgarian specificity and controversial phylogeography of Mycobacterium tuberculosis spoligotype ST 125BGR. FEMS Immunol Med Microbiol. 2010 Jun 1 ;59(1):90-9. Epub 2010 Mar 4.
95. Abadia E, Zhang J, dos Vultos T, Ritacco V, Kremer K, Aktas E, Matsumoto T, Refregier G, van Soolingen D, Gicquel B, Sola C. Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method. Infect Genet Evol. 2010 Oct ;10(7):1066-74. Epub 2010 Jul 17.

2011
96. A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia. Zhang J, Heng S, Le Moullec S, Refregier G, Gicquel B, Sola C, Guillard B. BMC Infect Dis. 2011 Feb 7 ;11:42. doi : 10.1186/1471-2334-11-42.
97. The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method : providing guidelines for Quality Assurance when working on membranes. Abadia E, Zhang J, Ritacco V, Kremer K, Ruimy R, Rigouts L, Gomes HM, Elias AR, Fauville-Dufaux M, Stoffels K, Rasolofo-Razanamparany V, Garcia de Viedma D, Herranz M, Al-Hajoj S, Rastogi N, Garzelli C, Tortoli E, Suffys PN, van Soolingen D, Refrégier G, Sola C. BMC Infect Dis. 2011 Apr 28 ;11:110. doi : 10.1186/1471-2334-11-110.
98. Using affinity propagation for identifying subspecies among clonal organisms : lessons from M. tuberculosis. Borile C, Labarre M, Franz S, Sola C, Refrégier G. BMC Bioinformatics. 2011 Jun 2 ;12:224. doi : 10.1186/1471-2105-12-224
99. Spoligotypes of Mycobacterium tuberculosis complex isolates from patients residents of 11 states of Brazil.Gomes HM, Elias AR, Oelemann MA, Pereira MA, Montes FF, Marsico AG, Kritski AL, Filho Ldos A, Caldas PC, Possuelo LG, Cafrune P, Rossetti ML, Lucena N, Saad MH, Cavalcanti HR, Leite CQ, de Brito RC, Lopes ML, Lima K, Souza M, Trindade Rde C, Zozio T, Sola C, Rastogi N, Suffys PN.Infect Genet Evol. 2012 Jun ;12(4):649-56. doi : 10.1016/j.meegid.2011.08.027. Epub 2011 Sep 1.

2012
100. Heterogeneity of Mycobacterium tuberculosis strains in Makassar, Indonesia. Sasmono RT, Massi MN, Setianingsih TY, Wahyuni S ; Anita, Halik H, Yusuf I, Dick T, Sola C, Bifani PJ, Phyu S. Int J Tuberc Lung Dis. 2012 Nov ;16(11):1441-8. doi : 10.5588/ijtld.12.0055.
101. Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array. Bergval I, Sengstake S, Brankova N, Levterova V, Abadía E, Tadumaze N, Bablishvili N, Akhalaia M, Tuin K, Schuitema A, Panaiotov S, Bachiyska E, Kantardjiev T, de Zwaan R, Schürch A, van Soolingen D, van ’t Hoog A, Cobelens F, Aspindzelashvili R, Sola C, Klatser P, Anthony R. PLoS One. 2012 ;7(8):e43240. doi : 10.1371/journal.pone.0043240. Epub 2012 Aug 20.
102. "Spoligoriftyping," a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system. Gomgnimbou MK, Abadia E, Zhang J, Refrégier G, Panaiotov S, Bachiyska E, Sola C. J Clin Microbiol. 2012 Oct ;50(10):3172-9. doi : 10.1128/JCM.00976-12. Epub 2012 Jul 18.
103. A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria. Lawson L, Zhang J, Gomgnimbou MK, Abdurrahman ST, Le Moullec S, Mohamed F, Uzoewulu GN, Sogaolu OM, Goh KS, Emenyonu N, Refrégier G, Cuevas LE, Sola C. PLoS One. 2012 ;7(6):e38409. doi : 10.1371/journal.pone.0038409. Epub 2012 Jun 18.
104. SITVITWEB—a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology. Demay C, Liens B, Burguière T, Hill V, Couvin D, Millet J, Mokrousov I, Sola C, Zozio T, Rastogi N. Infect Genet Evol. 2012 Jun ;12(4):755-66. doi : 10.1016/j.meegid.2012.02.004. Epub 2012 Feb 17.
105. Spoligotyping of Mycobacterium africanum, Burkina Faso. Gomgnimbou MK, Refrégier G, Diagbouga SP, Adama S, Kaboré A, Ouiminga A, Sola C. Emerg Infect Dis. 2012 Jan ;18(1):117-9. doi : 10.3201/eid1801.110275.
106. CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella nfections. Fabre L, Zhang J, Guigon G, Le Hello S, Guibert V, Accou-Demartin M, de Romans S, Lim C, Roux C, Passet V, Diancourt L,Guibourdenche M, Issenhuth-Jeanjean S, Achtman M, Brisse S, Sola C, Weill FX. 2012 PLoS One 7:e36995.
107. Label-free and reagentless electrochemical detection of PCR fragments using self-assembled quinone derivative monolayer : application to Mycobacterium tuberculosis. Zhang QD, March G, Noel V, Piro B, Reisberg S, Tran LD, Hai LV, Abadia E, Nielsen PE, Sola C, Pham MC. Biosens Bioelectron. 2012 Feb 15 ;32(1):163-8. doi : 10.1016/j.bios.2011.11.048. Epub 2011 Dec 7.
108. Spoligotypes of Mycobacterium tuberculosis complex isolates from patients residents of 11 states of Brazil. Gomes HM, Elias AR, Oelemann MA, Pereira MA, Montes FF, Marsico AG, Kritski AL, Filho Ldos A, Caldas PC, Possuelo LG, Cafrune P, Rossetti ML, Lucena N, Saad MH, Cavalcanti HR, Leite CQ, de Brito RC, Lopes ML, Lima K, Souza M, Trindade Rde C, Zozio T, Sola C, Rastogi N, Suffys PN. Infect Genet Evol. 2012 Jun ;12(4):649-56. doi : 10.1016/j.meegid.2011.08.027. Epub 2011 Sep 1
109. Ancient human tooth samples used for TB paleomicrobial Research. Annamária Pósa, Frank Maixner, Albert Zink, Gabriella Lovász, Erika Molnár,Zsolt Bereczki, Pascale Perrin, Olivier Dutour, Christophe Sola, György Pálfi Acta Biologica Szegediensis Volume 56(2):125-131, 2012

2013
110. "TB-SPRINT : TUBERCULOSIS-SPOLIGO-RIFAMPIN-ISONIAZID TYPING" an All-in-One assay technique for surveillance and control of multi-drug resistant tuberculosis on Luminex(R) devices.. Gomgnimbou MK, Hernández-Neuta I, Panaiotov S, Bachiyska E, Palomino JC, Martin A, Del Portillo P, Refregier G, Sola C. J Clin Microbiol. 2013 Aug 21. [Epub ahead of print]
111. Characterisation of Mycobacterium tuberculosis isolates lacking IS6110 in Viet Nam. Huyen MN, Tiemersma EW, Kremer K, de Haas P, Lan NT, Buu TN, Sola C, Cobelens FG, van Soolingen D.Int J Tuberc Lung Dis. 2013 Nov ;17(11):1479-85. doi : 10.5588/ijtld.13.0149.

2014
112. Validation of a microbead-based format for spoligotyping of Legionella pneumophila.. Gomgnimbou MK, Ginevra C, Peron-Cane C, Versapuech M, Refrégier G, Jacotin N, Sola C, Jarraud S.J Clin Microbiol. 2014 Jul ;52(7):2410-5. doi : 10.1128/JCM.00219-14. Epub 2014 Apr 23
113. Multidrug Resistant Mycobacterium tuberculosis : A Retrospective katG and rpoB Mutation Profile Analysis in Isolates from a Reference Center in Brazil.. de Freitas FA, Bernardo V, Gomgnimbou MK, Sola C, Siqueira HR, Pereira MA, Fandinho FC, Gomes HM, Araújo ME, Suffys PN, Marques EA, Albano RM. PLoS One. 2014 Aug 5 ;9(8):e104100. doi : 10.1371/journal.pone.0104100. eCollection 2014.
114. Multi-drug resistant Mycobacterium tuberculosis complex genetic diversity and clues on recent transmission in Punjab, Pakistan. Yasmin M, Gomgnimbou MK, Siddiqui RT, Refrégier G, Sola C. Infect Genet Evol. 2014 Oct ;27:6-14. doi : 10.1016/j.meegid.2014.06.017. Epub 2014 Jun 27
115. Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates.. Sengstake S, Bablishvili N, Schuitema A, Bzekalava N, Abadia E, de Beer J, Tadumadze N, Akhalaia M, Tuin K, Tukvadze N, Aspindzelashvili R, Bachiyska E, Panaiotov S, Sola C, van Soolingen D, Klatser P, Anthony R, Bergval I. BMC Genomics. 2014 Jul 7 ;15(1):572. doi : 10.1186/1471-2164-15-572.
116. Insights into the population structure of Mycobacterium tuberculosis using spoligotyping and RD(Rio) in a southeastern Brazilian prison unit. Huber FD, Sánchez A, Gomes HM, Vasconcellos S, Massari V, Barreto A, Cesconi V, de Almeida Machado SM, Gomgnimbou MK, Sola C, Larouzé B, Suffys PN, Saad MH. Infect Genet Evol. 2014 Aug ;26:194-202. doi : 10.1016/j.meegid.2014.05.031. Epub 2014 Jun 5.
117. Comparison of a Semiautomated Commercial Repetitive-Sequence-Based PCR Method with Spoligotyping, 24-Locus Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Typing, and Restriction Fragment Length Polymorphism-Based Analysis of IS6110 for Mycobacterium tuberculosis Typing. Brossier F, Sola C, Millot G, Jarlier V, Veziris N, Sougakoff W.J Clin Microbiol. 2014 Nov ;52(11):4082-6. doi : 10.1128/JCM.02226-14. Epub 2014 Sep 10.
118. Strain Classification of Mycobacterium tuberculosis Isolates in Brazil Based on Genotypes Obtained by Spoligotyping, Mycobacterial Interspersed Repetitive Unit Typing and the Presence of Large Sequence and Single Nucleotide Polymorphism. Vasconcellos SE, Acosta CC, Gomes LL, Conceição EC, Lima KV, de Araujo MI, Leite Mde L, Tannure F, Caldas PC, Gomes HM, Santos AR, Gomgnimbou MK, Sola C, Couvin D, Rastogi N, Boechat N, Suffys PN.PLoS One. 2014 Oct 14 ;9(10):e107747. doi : 10.1371/journal.pone.0107747. eCollection
119. Beijing Lineage of MDR Mycobacterium tuberculosis in Bulgaria, 2007-2011. Panaiotov S, Bachiyska E, Yordanova S, Atanasova Y, Brankova N, Levterova V, Sengstake S, Anthony R, Bergval I, Sola C, Kantardjiev T. Emerg Infect Dis. 2014 Nov ;20(11):1899-901. doi : 10.3201/eid2011.140468.
120. Molecular epidemiology of tuberculosis in Sicily, Italy : what has changed after a decade ? Celestino Bonura, Michel Gomgnimbou, Guislaine Refrégier, Aurora Aleo, Teresa Fasciana, Anna Giammanco, Christophe Sola, Caterina Mammina. BMC Infect Dis. 2014 Nov 19 ;14(1):602. doi : 10.1186/s12879-014-0602-4.

2015
121. Tuberculosis in evolution. Pálfi G, Dutour O, Perrin P, Sola C, Zink A. Tuberculosis (Edinb). 2015 Jun ;95 Suppl 1:S1-3. doi : 10.1016/j.tube.2015.04.007. Epub 2015 Apr 18. No abstract available. PMID:25981736
122. Clustured regularly interspersed short palindromic repeats (CRISPR) genetic diversity studies as a mean to reconstruct the evolution of the Mycobacterium tuberculosis complex. Sola C. Tuberculosis (Edinb). 2015 Feb 14. pii : S1472-9792(15)00030-X. doi : 10.1016/j.tube.2015.02.029. [Epub ahead of print]
123. Evidence for tuberculosis in 18th/19th century slaves in Anse Sainte-Marguerite (Guadeloupe - French Western Indies). Lösch S, Kim MR, Dutour O, Courtaud P, Maixner F, Romon T, Sola C, Zink A. Tuberculosis (Edinb). 2015 Feb 12. pii : S1472-9792(15)00007-4. doi : 10.1016/j.tube.2015.02.006. [Epub ahead of print]
124. Tuberculosis infection in a late-medieval Hungarian population. Pósa A, Maixner F, Sola C, Bereczki Z, Molnár E, Masson M, Lovász G, Spekker O, Wicker E, Perrin P, Dutour O, Zink A, Pálfi G. Tuberculosis (Edinb). 2015 Feb 13. pii : S1472-9792(15)00011-6. doi : 10.1016/j.tube.2015.02.010.
125. Tuberculosis in Late Neolithic-Early Copper Age human skeletal remains from Hungary. Pósa A, Maixner F, Mende
BG, Köhler K, Osztás A, Sola C, Dutour O, Masson M, Molnár E, Pálfi G, Zink A.Tuberculosis (Edinb). 2015
Feb 13. pii : S1472-9792(15)00012-8. doi : 10.1016/j.tube.2015.02.011.
126. High-Throughput CRISPR Typing of Mycobacterium tuberculosis Complex and Salmonella enterica Serotype Typhimurium. Sola C, Abadia E, Le Hello S, Weill FX. Methods Mol Biol. 2015 ;1311:91-109. doi : 10.1007/978-1-4939-2687-96.
127. Genomics and Machine Learning for Taxonomy Consensus : The Mycobacterium tuberculosis Complex Paradigm. Azé J, Sola C, Zhang J, Lafosse-Marin F, Yasmin M, Siddiqui R, Kremer K, van Soolingen D, Refrégier G. PLoS One. 2015 Jul 8 ;10(7):e0130912. doi : 10.1371/journal.pone.0130912. eCollection 2015
128. Molecular analysis of the embCAB locus and embR gene involved in resistance to ethambutol in clinical isolates of Mycobacterium tuberculosis in France. Brossier F, Sougakoff W, Bernard C, Petrou M, Adeyema K, Pham A, Amy de la Breteque D, Vallet M, Jarlier V, Sola C, Veziris N. Antimicrob Agents Chemother. 2015 Jun 1. pii : AAC.00150-15.
129. Tuberculosis case detection in Nigeria, the unfinished agenda. Obasanya J, Abdurrahman ST, Oladimeji O, Lawson L, Dacombe R, Chukwueme N, Abiola T, Mustapha G, Sola C, Dominguez J, Cuevas LE. Trop Med Int Health. 2015 Oct ;20(10):1396-402. doi : 10.1111/tmi.12558. Epub 2015 Jul 15.
130. Characterization of a Clone of Mycobacterium tuberculosis Clinical Isolates with Mutations in KatG (A110V), EthA (Q269STOP), and the inhA Promoter (-15C→T). Brossier F, Sola C, Bernard C, Jarlier V, Veziris N, Sougakoff W. J Clin Microbiol. 2015 Sep ;53(9):3104. doi : 10.1128/JCM.01537-15. Epub 2015 Jul 8. No abstract available. PMID : 26157154
131. Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil. Dantas NG, Suffys PN, Carvalho Wda S, Gomes HM, de Almeida IN, de Assis LJ, Augusto CJ, Gomgnimbou MK, Refregier G, Sola C, de Miranda SS. BMC Infect Dis. 2015 Aug 1 ;15:306. doi : 10.1186/s12879-015-1057-y
132. E-DNA Sensor of Mycobacterium tuberculosis Based on Electrochemical Assembly of Nanomaterials (MWCNTs/PPy/PAMAM). Miodek A, Mejri N, Gomgnimbou M, Sola C, Korri-Youssoufi H. Anal Chem. 2015 Sep 15 ;87(18):9257-64. doi : 10.1021/acs.analchem.5b01761. Epub 2015 Aug 27.

2016
133. A Microfluidic Electrochemical Biosensor based on MWCNT/ferrocene forGenomic DNA Detection of Mycobacterium Tuberculosis in clinical isolates. Zribi B,Roy E.,Pallandre A,Chebil S, Koubaa M, Mejri N,Magdinier Gomez H, Sola C, Korri-Youssoufi H, Haghiri-Gosnet AM.. Biomicrofluidics, 2016 Feb 2 ;10(1):014115. doi : 10.1063/1.4940887. eCollection 2016
134. Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor. Refrégier G, Abadia E, Matsumoto T, Ano H, Takashima T, Tsuyuguchi I, Aktas E, Cömert F, Gomgnimbou MK, Panaiotov S, Phelan J, Coll F, McNerney R, Pain A, Clark TG, Sola C. Infect Genet Evol. 2016 Nov ;45:461-473. doi : 10.1016/j.meegid.2016.10.009.
135. Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR.Yasmin M, Le Moullec S, Siddiqui RT, De Beer J, Sola C, Refrégier G. Tuberculosis (Edinb). 2016 Dec ;101:160-163. doi : 10.1016/j.tube.2016.10.003

2017
136. Obituary, Pra. Caterina Mammina 1957-2016. Bonura C, Sola C and F. Vitale. Tuberculosis (Edinb). 2017 Mars ;103 A1-A2.
137. Use of GeneXpert Remnants for Drug Resistance Profiling and Molecular Epidemiology of Tuberculosis in Libreville, Gabon.Alame-Emane AK, Pierre-Audigier C, Aboumegone-Biyogo OC, Nzoghe-Mveang A, Cadet-Daniel V, Sola C, Djoba-Siawaya JF, Gicquel B, Takiff HE. J Clin Microbiol. 2017 Jul ;55(7):2105-2115. doi : 10.1128/JCM.02257-16. Epub 2017 Apr 26
138. Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT. Molina-Moya B, Gomgnimbou MK, Lafoz C, Lacoma A, Prat C, Refrégier G, Samper S, Dominguez J, Sola C. Am J Trop Med Hyg. 2017 Sep ;97(3):806-809. doi : 10.4269/ajtmh.16-0782. Epub 2017 Jul 19.
139. Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping. Ratovonirina NH, Rakotosamimanana N, Razafimahatratra SL, Raherison MS, Refrégier G, Sola C, Rakotomanana F, Rasolofo Razanamparany V. BMC Infect Dis. 2017 Aug 14 ;17(1):562. doi : 10.1186/s12879-017-2653-9.
140. Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar. Rasoahanitralisoa R, Rakotosamimanana N, Stucki D, Sola C, Gagneux S, Rasolofo Razanamparany V. PLoS One. 2017 Oct 20 ;12(10):e0186088. doi : 10.1371/journal.pone.0186088. eCollection 2017.
141. Genetic diversity of Mycobacterium tuberculosis from Pará, Brazil, reveals a higher frequency of ancestral strains than previously reported in South America. Conceição EC, Rastogi N, Couvin D, Lopes ML, Furlaneto IP, Gomes HM, Vasconcellos SEG, Suffys PN, Schneider MPC, de Sousa MS, Sola C, de Paula Souza E Guimarães RJ, Duarte RS, Batista Lima KV. Infect Genet Evol. 2017 Oct 30 ;56:62-74. doi : 10.1016/j.meegid.2017.10.021. [Epub ahead of print]
142. Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil. Dantas NGT, Suffys PN, Carvalho WDS, Gomes HM, Almeida IN, Figueiredo LJA, Gonçalves AD, Gomgnimbou MK, Refregier G, Sola C, Miranda SS. Mem Inst Oswaldo Cruz. 2017 Nov ;112(11):769-774. doi : 10.1590/0074-02760170062.

2018
143. Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Minh Ha D, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-Lopez EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigao J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Oliveira Sousa E, Streicher EM, Helden PV, Viveiros M, Warren RM, McNerney R, Pain A, et al. 2018. Nat Genet doi:10.1038/s41588-017-0029-0.
144. Author Correction : Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Coll F, Phelan J, Hill-Cawthorne GA, Nair MB, Mallard K, Ali S, Abdallah AM, Alghamdi S, Alsomali M, Ahmed AO, Portelli S, Oppong Y, Alves A, Bessa TB, Campino S, Caws M, Chatterjee A, Crampin AC, Dheda K, Furnham N, Glynn JR, Grandjean L, Ha DM, Hasan R, Hasan Z, Hibberd ML, Joloba M, Jones-López EC, Matsumoto T, Miranda A, Moore DJ, Mocillo N, Panaiotov S, Parkhill J, Penha C, Perdigão J, Portugal I, Rchiad Z, Robledo J, Sheen P, Shesha NT, Sirgel FA, Sola C, Sousa EO, Streicher EM, Van Helden P, Viveiros M, Warren RM, McNerney R, Pain A, Clark TG. Nat Genet. 2018 May ;50(5):764. doi : 10.1038/s41588-018-0074-3.
145. Mycobacterium tuberculosis complex genotypes circulating in Nigeria based on spoligotyping obtained from Ziehl-Neelsen stained slides extracted DNA. Barbara Molina-Moya, Michel Gomgnimbou, Lizania Spinasse Xavier-Olessa Daragon, Guislaine Refrégier, Lovett Lawson, Russell Dacombe, Luis E. Cuevas, Thomas Edwards, Olanweranju Oladimeji, Saddiq T. Abdurrahman, Joshua Obasanya, Jose Dominguez and Christophe Sola. PloS Negl. Trop. Dis., 2018,12,2, e0006242.
146. Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia. Barbara Molina-Moya, Mulualem Agonafir, Silvia Blanco, Russell Dacombe Michel K. Gomgnimbou, Lizania Spinasse, Meissiner Gomes-Fernandes, Daniel G. Datiko, Thomas Edwards, Luis E. Cuevas, Jose Dominguez and Christophe Sola. Sci Rep. 2018, 8, 1, 3987.
147. TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex. Klotoe BJ, Molina-Moya B, Gomes HM, Gomgnimbou MK, Oliveira Suzarte L, Féres Saad MH, Ali S, Dominguez J, Pimkina E, Zholdybayeva E, Sola C, Refrégier G. J Microbiol Methods. 2018 Sep ;152:10-17. doi : 10.1016/j.mimet.2018.06.003. Epub 2018 Jun 15

2019
148. E-DNA detection of rpoB gene resistance in Mycobacterium tuberculosis in real samples using Fe3O4/polypyrrole nanocomposite. Haddaoui M, Sola C, Raouafi N, Korri-Youssoufi H.Biosens Bioelectron. 2019 Mar 1 ;128:76-82. doi : 10.1016/j.bios.2018.11.045. Epub 2018 Dec 7
149. Exportation of MDR TB to Europe from Setting with Actively Transmitted Persistent Strains in Peru. Acosta F, Agapito J, Cabibbe AM, Cáceres T, Sola C, Pérez-Lago L, Abascal E, Herranz M, Meza E, Klotoe B, Muñoz P, Rossolini GM, Bartoloni A, Tortoli E, Cirillo DM, Gotuzzo E, García de Viedma D.Emerg Infect Dis. 2019 Mar ;25(3):596-598. doi : 10.3201/eid2503.180574
150. Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade. Conceição EC, Refregier G, Gomes HM, Olessa-Daragon X, Coll F, Ratovonirina NH, Rasolofo-Razanamparany V, Lopes ML, van Soolingen D, Rutaihwa L, Gagneux S, Bollela VR, Suffys PN, Duarte RS, Lima KVB, Sola C.Infect Genet Evol. 2019 Sep ;73:337-341. doi : 10.1016/j.meegid.2019.06.001. Epub 2019 Jun 3
151. Genomic characterization of MDR/XDR-TB in Kazakhstan by a combination of high-throughput methods predominantly shows the ongoing transmission of L2/Beijing 94-32 central Asian/Russian clusters. Klotoe BJ, Kacimi S, Costa-Conceicão E, Gomes HM, Barcellos RB, Panaiotov S, Haj Slimene D, Sikhayeva N, Sengstake S, Schuitema AR, Akhalaia M, Alenova A, Zholdybayeva E, Tarlykov P, Anthony R, Refrégier G, Sola C. BMC Infect Dis. 2019 Jun 24 ;19(1):553. doi : 10.1186/s12879-019-4201-2
152. Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea : microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations. Guernier-Cambert V, Diefenbach-Elstob T, Klotoe BJ, Burgess G, Pelowa D, Dowi R, Gula B, McBryde ES, Refrégier G, Rush C, Sola C, Warner J. Sci Rep. 2019 Oct 29 ;9(1):15549. doi : 10.1038/s41598-019-51892-5.

Articles in press or submitted
153. Spoligotypes of tuberculosis drug resistance from Beira compared to genotypes circulating in Mozambique, Anselmo LMP, Conceição, EC, Namburete E, Feliciano C, Spindola de Miranda, S, Sola C, Bollela VR. Journal of the Brazilian Society of Tropical Medicine 2019, in Press.
154. Trends in Tuberculosis epidemiology in a hot-spot region : Northern Paris and Suburbs.Catherine Pierre-Audigier, Amel-Kevin Alame-Emane, Benoit Audigier, Cheikh Talla, Nathalie Grall, Raymond Ruimy, Antoine Andremont, Véronique Cadet-Daniel, Christophe Sola, Muriel Vray, Howard Takiff, Laurence Armand-Lefevre and Brigitte Gicquel. International Journal of Tuberculosis and Lung Disease, 2019, in Press
155. IS-NTF/RINT, a new method for the epidemiological surveillance of MDR L2/Beijing strains Mycobacterium tuberculosis B. Klotoe, N. Kurepina, E. Zholdibayeva, S. Panaiotov, B. Kreiswirth, S. Sengstake, R. Anthony, C. Sola, G. Refrégier. Tuberculosis 2019, in revision
156. Refrégier, G., C. Sola and C. Guyeux (2019). "Unexpected diversity of CRISPR unveils some evolutionary
patterns of repeated sequences in Mycobacterium tuberculosis." J. Bacteriol. submitted
157. Guyeux, C., C. Sola and G. Refrégier (2019a). "Exhaustive reconstruction of the CRISPR locus in M.
tuberculosis complex using short reads " BMC Genomics submitted.
158. Spoligotyping of Mycobacterium tuberculosis Isolates using Luminex®-based Method in Lebanon. Khaldoun Massoud, Georges F. Araj, Lina Reslan, Sukayna Fadlallah, Michel Wehbe, Lina Y. Itani, Aline Z. Avedissian, Ghassan Dbaibo, Antoine Saade, Guislaine Refrégier, Christophe Sola, Ghassan M. Matar. Journal of Infectious Diseases in Developing Countries submitted.

OTHER PUBLICATIONS : COLLECTIVE, CHAPTERS, CONFERENCE PROCEEDINGS

BOOK CHAPTERS
- C. Sola and N. Rastogi. Genetic description and frequency maps of some major genotype families of Mycobacterium tuberculosis. Molecular Epidemiology and Population Genetics of Tuberculosis, Edition : 2006, 133 pages, Chapter : Chapter 2, Publisher : Akademi Sains, Malaysia / Academy of Sciences, Malaysia, Editors : Yun-Fong Ngeow, Sook-Fan Yap, pp.23-68
- N. Rastogi and C. Sola. Chapter 2. Molecular Evolution of the Mycobacterium tuberculosis complex p54-91. In “Tuberculosis 2007 From basic science to patient care” , Amedeo on line book www.TuberculosisTextbook.com 687 pages, published electronically on May 2007, (100.000 téléchargements en deux ans). PRIX COLLECTIF “Amadeo”
- G. Valetudie, J.y Desachy, C. Sola, 2007. 21st International Conference on Advanced Information Networking and Applications Workshops (AINAW’07) pp. 668-671 Markov Models to Classify M. tuberculosis Spoligotypes (compte-rendus de congrès)
- L. Fabre, J. Zhang, G. Guigon, S. Le Hello, V. Guibert, L. Diancourt, S. Issenhuth-Jeanjean, C. Roux, S. Brisse, C. Sola and F.X. Weill. Improving laboratory surveillance of Salmonella infections by fast typing based on CRISPR polymorphisms.
International Symposium on Salmonella and Salmonellosis I3S, Saint Malo 2010, June 28-30th. Conference Proceedings Book.
- C. Sola, G. Refrégier, et M. Gomgnimbou. Création d’un réseau de génotypage CRISPR en France et en Europe : expérience de cinq ans en matière de recherche, de formation et de santé publique. Euroreference 2014 Juillet 22, p.5-8.

CONGRESS ORGANIZATION
2012 : TB Evolution Congress, ICEPID – ICEPT 2, Hungary, 22-25th March 2012. Co-organizer

ORAL COMMUNICATIONS : Invited speaker, 2009 to 2019
- 2009 : European Concerted Action « TB Adapt » Meeting, Tygerberg, Afrique du Sud, September 15-18th, , KeyNote lecture, Invited Speaker. New Development in High Throughput spoligotyping applied to tuberculosis molecular epidemiology and molecular evolutionary studies

- 2009 : 7th Luminex xMap meeting-Amsterdam, The Netherlans, October 2009 6-8th., Invited Speaker. High Throughput spoligotyping of the Mycobacterium complex for molecular evolution and epidemiological studies

- 2009 : German Days of Mycobacteriology, Invited Speaker ; December 11-12th « High-Throughput Multiplexed Genotyping Methods : Applied (Diagnostics, Epidemiology) and Fundamental Research Perspectives for Tuberculosis Research »

- 2010 : 20th European Congres on Clinical Microbiology and Infectious Diseases, ECCMID, Wien 2010
Luminex symposium, Saturday, April 10, « Current and future perspectives in clinical diagnosis of viral and bacterial pathogens using a unique multiplexing technology », Key Note, Invited Speaker « High-Throughput CRISPR genotyping of bacterial pathogens for Public Health and Molecular Evolution »

- 2010 : 8th Planet xMap meeting Europe-Vienna, Invited speaker, Luminex Lunch symposium on MagPix « Preliminary results on the switch of « spoligotyping », a Public Health DNA application for tuberculosis surveillance and control, from a Luminex 200 towards the new MagPix Luminex device » 20 September

- 2011 : 9th Planet xMap meeting Europe-Vienna, Invited speaker « CRISPR and RNA characterization on microspheres for academic and operational research in microbiology » Thursday 29 September.

- 2012 : TB Evolution Congress, ICEPID – ICEPT 2, Hungary, 22-25th March 2012. Invited speaker « CRISPR genetic diversity studies as a mean to reconstitute the evolution of the Mycobacterium tuberculosis complex »

- 2012 : 6th Meeting of the SLAM-TB (Latin-American society for Mycobacteriology), Buccaramanga, Colombia, October 2012. MDR-Tuberculosis diagnostics outbreak surveillance, prevention and patient care : all in one tube. Participation cancelled for familial reasons.

- 2013 : xSamples Rotterdam Luminex meeting, Jun 19th-20th Invited speaker « High-Throughput CRISPR genotyping of bacterial pathogens for Public Health and Molecular Evolution »

- 2014 : World’s TB Day Conference 21st March, Ghent, Belgium. Invited speaker « High throughput combined methods for resistance emergence analysis, diagnostic and epidemiology : the multi-drug resistant tuberculosis paradigm »

- 2014 : South Latin American Mycobacteriology and Tuberculosis Meeting, 14-17th September, Canela, Brazil, Invited speaker « High throughput combined CRISPR and SNP typing for infectious disease control : Tuberculosis shows the way »

- 2014 : Ecoforum, Saint Petersburg, 22-24th September, Invited speaker ; « CRISPR genetic diversity studies and high-throughput genomic tools to study the evolution and control of bacterial infectious diseases : the Mycobacterium tuberculosis complex model »

- 2014 : Royal Tropical Institut, November 10th, Invited speaker. « CRISPR genetic diversity studies and high-throughput genomic tools to study the evolution and control of bacterial infectious diseases : the Mycobacterium tuberculosis complex model »

- 2015 : First African-Asian society for Mycobacteriology. Ispahan, Iran, 7-12th March Invited speaker « An all-in-one Solution for simultaneous spoligotyping and drug resistance gene analysis of M.TB ; TB-sprint and TB-sprint plus ». (Visa not issued, participation cancelled).

- 2015 : xMAP® connect : Amsterdam, The Netherlands, 25th-26th November. Luminex meeting. « All in one solutions for control of MDR and XDR tuberculosis : Towards new methods for both personalized medicine and public health ». Invited speaker

- 2016 : World TB Day : Palermo, Sicily, Italy. 24th March. Prevention and treatment of Tuberculosis, the sicilian experience. « Molecular epidemiology of tuberculosis. Typing globally to act locally ». Key Note speaker.

- 2016 : Brazilian Society for Tropical Medicine Congress, Maceio, Aug. 22-24th ; TB Network : Update on TB-SPRINT Plus for MDR-TB diagnosis and detection of different Mtb lineages. Invited speaker

- 2016 : International multidisciplinar seminar on the diagnostic treatment and control of TB In Colon region, Panama, Sept. 2016 22-24th. Development of molecular methods for the diagnostic and control of tuberculosis Invited speaker.

- 2017 : International multidisciplinar seminar on the diagnostic treatment and control of TB In Colon region, Panama, Dec. 2017 2-6th. Co-evolution of Mycobacterium tuberculosis and its hosts in different population models Invited speaker.

- 2017 : 1st Euroxanth COST meeting, Coimbra, Dec. 2017, 13-15th, Postgenomic lateral transfer knowledge from Salmonella enterica, Mycobacterium tuberculosis, Legionella pneumophila CRISPRs genetic diversity knowledge and expertise to a new model : Xanthomonas. Invited Speaker

- 2018 : XIVth MEEGID congress, Sitges, Barcelona, Nov. 5th-9th. Stream 1 : WGS in Tuberculosis : Recent Progress and User-Friendly Approaches. TB genomic diversity and spatial genetics made easier : scientific and methodological issues in multi-scaling methods and analysis for epidemiological and evolutionary genetics of tuberculosis, G. Refrégier, B. Klotoe, R. Debry, A. Pinto, A. Le Meur, D. Haj Slimene, H. Mardassi, D. Garcia de Viedma, C. Sola*, invited speaker.

- 2019 : XV Argentinan Congress of Microbiology, 25-27 September 2019 2019 (Dr. G. Refrégier, on behalf on Pr. Christophe Sola) and TRANS-TB-TRANS working meeting (Dr. G. Refrégier, on behalf on Pr. Christophe Sola)

- 2019 : NAPATA_tuberculosis, Khartoum, November 30th , Kick-off meeting

OTHER ORAL COMMUNICATIONS, POSTERS, 2009-2019
- 2009 : 30th Annual Congress of the European Society of Mycobacteriology, Porto, Portugal, 5-8 July.

  • Clustering of spoligo-patterns : towards an automation of Mycobacterium tuberculosis complex classification. C. Borile , G. Refrégier*, M. Labarre, S. Franz, M. Mézard, C. Sola (Oral Presentation* July 6th, OP 2)
  • Membrane- based versus microbead- based spoligotyping : Preliminary results on a quality- insurance study on 10 sites worlwide. E. Abadia*, J. Zhang, G. Refrégier, C. Sola (Oral Presentation*, July 8th, OP28)
  • Diversity and evolution of M. tuberculosis. O. Mestre, T. Luo, J. Rauzier, M. Golec, N. Rastogi, V. Rasolofo, T. Tonjum, C. Sola, I. Matic, J. Mei, Q. Gao, T.D.Vultos, B. Gicquel (Poster, PP5)

- 2010 : 31st Annual Congress of the European Society of Mycobacteriology, Bled, Slovenia, 5-8 July.

  • MDR-TB : high-Throughput Screening to identify Transmitting Strains via Population Genetics. G. Refrégier, E. Abadia, J. Zhang, A. Clermont, C. Sola (Poster, PP25)
  • Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high throughput SNPS-based method. E. Abadia*, J. Zhang, T. Dos Vultos, V. Ritacco, K. Kremer, E. Aktas, T. Matsumoto, G. Refregier, D. van Soolingen, B. Gicquel, C. Sola (Oral Presentation*, OP31)
  • A first assessment of the genetic diversity of Mycobacterium tuberculosis in Cambodia. J. Zhang, S. Heng, S. Le Moullec, G. Refregier, B. Gicquel, B. Guillard, C. Sola (Poster, PP98)

- 2010 : 10th International Conference on Ancient DNA and Related Biomolecules, 10-13th October 2010, Munich, Germany.

  • Anthropological Investigations and aDNA analysis on bone samples from Guadeloupe (18th/19th Century) with evidence of tuberculosis. M-R. Kim, A. G. Nerlich, P. Courtaud, T. Romon, C. Sola, O. Dutour, S. Lösch

- 2010 : 30ème Réunion interdisciplinaire de chimiothérapie antiinfectieuse (RICAI), Paris, 2-3 Décembre

  • Emergence d’un nouveau variant importé « Harlem 3 » du complexe Mycobacterium tuberculosis (MCTU) dans le nord Parisien. R. Ruimy, S. Diamantis, J. Zhang, S. Le Moullec, G. Refrégier, E. Bouvet, J.C. Lucet, A. Andremont, C. Sola (Poster)

- 2011 : Paleopathology Association conference. Minneapolis –April 13-16

  • A multi-technical approach to ancient DNA analysis : Tuberculosis in bone samples from slave burials in Guadeloupe (cemetery in Anse Sainte-Marguerite ,18th/19th century). M. Kim, A. Zink, A.G. Nerlich, P. Courtaud, T. Romon, O. Dutour, C. Sola, S. Lösch (Poster)

- 2011 : 32nd Annual Congress of the European Society of Mycobacteriology, Lübeck, Germany, June 26-29.

  • Mycobacterium africanum did not disappear from Burkina Faso : lessons by direct spoligotyping from Ziehl-Neelsen positives slides extracted. M. Gomgnimbou, G. Refrégier, S. Diagbouga, A. Sanou, A. Ouiminga, A. Kabore, C. Sola (Poster P199).
  • Using Knowledge Discovery Using Data (KDD) on an integrated VNTR-spoligotyping-IS6110-RFLP database : the RIVM story. C. Sola, G. Refrégier, J. Zhang, K. Kremer, P. Supply, D. van Soolingen (Oral presentation OP200)

- 2012 : European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) London March 31st-April 3rd

  • Characterization of drug-resistant Mycobacterium tuberculosis strains from Bulgaria and Georgia by bead-based multiplex ligation-dependent proba amplification. S. Sengastek, I. Bergval, N. Brankova, V. Levterava, E. Abadia, M. Akhalaia, K. Tuin, A. Schuitema, S. Panaiotov, E. Bachiyska, R. Aspindzelashvili, P. Klatser, C. Sola, R. Anthony, P1372. p.130-131.

- 2012 : TB Evolution Congress, ICEPID – ICEPT 2, Hungary, 22-25th March 2012.

  • Spoligoriftyping- A new DPO based direct hybridizaton assay for effective TB control on a multianalyte microbead-based system. M.K. Gomgnimbou, E. Abadia, J. Zhang, G. Refrégier, S. Panaiotov, E. Bachyiska, C. Sola (Poster P-T11)
  • Evidence of tuberculosis at 18th/19th century slaves in Anse Sainte-Marguerite (Guadeloupe). S. Lösch, M. Kim, O. Dutour, P. Courtaud, T. Romon, C. Sola, A. Zink (Poster P-T15)
  • TB lineages : do we have the tools to identify pathogenic specificities ? G. Refrégier, C. Borile, S. Franz, M. Labarre, C. Sola (Poster P-T27)

- 2012 : 33rd Annual Congress of the European Society of Mycobacteriology, Brasov, Romania, June 29th-July 4th.

  • Simultaneous genotyping and Rifampin resistance mutation analysis of tuberculosis clinical isolates DNA from Pakistan (OP115). M. Yasmin*, R. Tabassum, J. Zhang, M.K. Gomgnimbou, G. Refrégier, N. Mujtaba, A. Ghaffar, C. Sola (*Oral communication)
  • Spoligoriftyping : simultanous MDR-TB polecular diagnostics and genotyping on microbead based systems (OP112). M.K Gomgnimbou*, E. Abadia, I. Hernandez-Neuta, J. Zhang, A. Martin, J. C. Palomino, P. del Portillo, E. Bachiyska, S. Panaiotov, G. Refrégier, C. Sola (*Oral communication)
  • Quickened protocol for cheap MIRU-VNTR typing in Mycobacterium tuberculosis complex using duplex PCR. G. Refrégier, S. Le Moullec, M. Yasmin, J. De Beer, C. Sola (Poster P147)
  • A snapshot on the molecular epidemiology of tuberculosisin Western Sicily. M. Cuntro, J. Zhang, G. Refrégier, W. Sougakoff, C. Bonura, A. Giammanco, C. Mammina, C. Sola (Poster P159)
  • Preliminary results on the transfer of the RIOT and RIOT-X on a microbead-based high throughput analyzer. M. K. Gomgnimbou, I. Hernandez-Neuta, A. Martin, J. C. Palomino, G. Refrégier, C. Sola, P. del Portillo (Poster P145)

- 2012 : Tuberculosis 2012, Institut Pasteur EMBO Conference, September 11th-September 15th

  • Investigation by polyphasic molecular typing of the structure population of Mycobacterium tuberculosis strains in France. MS Fangous, J. Robert, F. Brossier, C. Sola, G. Millot, N. Veziris, V. Jarlier, W. Sougakoff (Poster n°352)

- 2012 : 64th Annual Meeting of the German-Society-for-Hygiene-and-Microbiology (DGHM) Location : Hamburg, GERMANY Date : SEP 30-OCT 03, 2012

  • Screen my genome to reveal my secrets’ - Combined species identification, genotyping, and drug resistance detection of Mycobacterium tuberculosis cultures by MLPA on a bead-based array. Sengstake, S. ; Bergval, I. ; Brankova, N. ; et al.
    Sponsor(s) : German Soc Hyg & Microbiol (DGHM)
    Source : International Journal of Medical Microbiology Volume : 302 Supplement : 1 Pages : 8-8 Published : sep. 2012

- 2013 : Mycoclub, Toulouse, Congrès des mycobactériologistes de la SFM, May 21-22 2013

  • Loci mini-satellites et génotypage du complexe Mycobacterium avium-intracellulare. S. Mzalouat, L. Batrin, C. Wichlacz, G. Millot, C. Sola, W. Sougakoff, G. Refrégier (Poster)

- 2013 : 34th Annual Congress of the European Society of Mycobacteriology, Firenze, Italy, June 29th-July 3rd

  • TB Sprint : Spoligo-Rifampin-Isoniazid Typing. M. K. Gomgnimbou, I. Hernandez-Neuta, S. Panaiotov, E. Bachiyska, A. Martin, J. C. Palomino, P. del Portillo G. Refrégier, C. Sola* (*Oral communication 89)
  • TB-miner ; an on-line tool to describe classification of Mycobacterium tuberculosis complex isolates, based on the wide scale diversity of the database in The Netherlands. J. Aze, G. Refrégier, K. Kremer, D. van Soolingen, C. Sola (Poster P231)
  • Label-free and Multiplexed Electrochemical Detection of PCR Fragments on Screen-Printed Electrode Arrays. Application to spoligotyping of Mycobacterium tuberculosis. L.V. Hai, S. Reisberg, M.K. Gmgnimbou, C. Sola, M.C. Pham, B. Piro (Poster P90)
  • Accurate identification of second line drug resistance and local MDR epidemic Mycobacterium tuberculosis strains using an adapted SNP-based multiplex LPA assay. S. Sengstake, I. Bergval, A. Schuitema, K. Tuin, J. de Beer, N. Bablishvilli, N. Bzekalava, N. Brankova, V. Levterova, E. Abadia, R. Aspindzelashvili, C. Sola, S. Panaiotov, D. van Soolingen, R. Anthony (Poster P139)

- 2013 : 10th International Meeting on Microbial Epidemiological Markers, Institut Pasteur, October 2-5

  • TB Sprint : Spoligo-Rifampin-Isoniazid Typing (Oral Presentation).
    M. K. Gomgnimbou, I. Hernandez-Neuta, S. Panaiotov, E. Bachiyska, A. Martin, J. C. Palomino, P. del Portillo G. Refrégier, C. Sola* (*Oral communication)
  • TB-miner ; an on-line tool to describe classification of Mycobacterium tuberculosis complex isolates, based on the wide scale diversity of the database in The Netherlands. J. Aze, G. Refregier, K. Kremer, D. van Soolingen, C. Sola (Poster P231)
  • Transfer of Legionella pneumophila sequence type 1/Paris pulsotype Spoligotyping on a Microbead-based high throughput format. M. K. Gomgnimbou, C. Ginevra, C. Peron-Cane, M. Versapuech, G. Refrégier, N. Jacotin, C. Sola, S. Jarraud

- 2013 : Legionella, Melbourne, 8th International congress on Legionella, October 29th-November 1st

  • Transfer of Legionella pneumophila sequence type 1/Paris pulsotype Spoligotyping on a Microbead-based high throughput format. M. K. Gomgnimbou, C. Ginevra, C. Peron-Cane, M. Versapuech, G. Refrégier, N. Jacotin, C. Sola, S. Jarraud (Poster).

- 2014 : 35th Annual Congress of the European Society of Mycobacteriology, Vienna, Austria, June 29th-July 2nd

  • What classification for Mycobacterium tuberculosis complex ? Insights from the new on-line tool, TB-miner, based on the wide-scale diversity of the database in the Netherlands. G. Refrégier, J. Aze, F. Lafosse-Marin, M. Yasmin, R. Siddiqi, K. Kremer, D. van Soolingen, C. Sola (Oral communication)
  • Euro-American lineage SNPs classification. N. Dantas, M. K. Gomgnimbou, D. van Soolingen, G. Refrégier, C. Sola (Poster)
  • The reconstruction of the Mycobacterium tuberculosis “S” family history using Sicily as a start point. What did we learn from 20 years of spoligotyping VNTR and SNP typing ? C. Bonura*, M.K. Gomgnimbou, M. Cuntro, A. Giammanco, C. Mammina, G. Refrégier, C. Sola (Poster) Awarded by the ESM board to C. Bonura, poster presented in the Faculty of 1000 (F1000Posters 2014, 5 : 963 (poster)

- 2014 : Symposium of the International network of the Pasteur Institutes. Paris, 10-13th Sept. 2014

  • Spoligotype profile analyses of M. tuberculosis clinical strains isolated from the six different provinces of Madagascar . N. Rakotosamimanana, N. H. Ratovonirina, A. Ratsiferana, J. Rabemiarana, H. Ramarokoto, C. Sola, N. Rastogi, V. Rasolofo (Poster)

- 2015 : 25th European Congress of Clinical Microbiology and Infectious Diseases (ECCMID, Copenhagen, 25-28 April

  • Molecular characterization of a clone of Mycobacterium tuberculosis clinical isolates with mutations KatG A110V, EthA Q269STOP and inhA promoter -15C→T. F. Brossier, C. Sola, C. Bernard, V. Jarlier, N. Veziris, W. Sougakoff

- 2015 : FEMS : 6th Congress of European Microbiologists (FEMS 2015) Maastricht Jun 7th-11th

  • TB-SPRINT ultra : Development of a microbead-based method for detection of mutations associated with second-line drugs and ethambutol resistance in Mycobacterium tuberculosis isolates. B. Klotoe, B. Molina-Moya*, M.K. Gomgnimbou, P. del Portillo, E. Pimkina, J. Dominguez, G. Refrégier, C. Sola (Poster)

- 2015 : 36th Annual Congress of the European Society of Mycobacteriology, Riga, Latvia, June 28th-July 2nd

  • Genotyping automatization : Preliminary results on first and second-line drug resistance detection in M. tuberculosis complex. H. Magdinier Gomes, B. Klotoe, B. Molina, J. Dominguez Sajid Ali, M.H. Saad, M.K. Gomgnimbou, C. Sola (Poster P156)
  • “TB-SPRINT” on sputum DNA extracts from Ethiopia : first comparison to GeneXpert and Genotype MTBDRplus. B. Molina-Moya, S. Blanco, M. Agonafir, M.K. Gomgnimbou, L. Spinasse, G. Refrégier, D. Datiko, L. Cuevas, J. Dominguez, C. Sola (Poster P153)
  • Genetic diversity of Mycobacterium tuberculosis in Nigeria based on spoligotyping on DNA extracted from positive Ziehl-Neelsen-stained slides. B. Molina-Moya, S. Blanco, M.K. Gomgnimbou, L. Spinasse, H. Magdinier Gomes, G. Refrégier, L. Cuevas, L. Lawson, S. T. Abdurrahman, J. Obasanya, J. Dominguez, C. Sola (Poster P149)
  • Direct spoligotyping on DNA extracted from Mycobacterium tuberculosis positive Ziehl-Neelsen stained slides from Ethiopia. B. Molina-Moya, S. Blanco, M. Agonafir, M.K. Gomgnimbou, L. Spinasse, H. Magdinier Gomes, G. Refrégier, D. Datiko, L. Cuevas, J. Dominguez, C. Sola (Poster P142)
  • Detecting Pseudo-Beijing M. tuberculosis isolates using TBminer. M. Yasmin, J. Azé, R. Siddiqui, C. Sola, G. Refrégier (Poster P182)
  • Challenges in setting -up molecular diagnostic tools for tuberculosis drug resistance detection and epidemiology studies in low -income countries. V. Rasolofo*, M.S. Rabodoarivelo, N. Ratovonirina, S. Razafimahatratra, J.C. Palomino, C. Sola, F. Rakotomanana, A. Martin (*Oral communication OP13)
  • Insights from molecular typing into the rapidly evolving epidemiological landscape of tuberculosis in Sicily (OP14) C. Bonura*, M. Gomgnimbou, G. Refrégier, C. Sola, C. Mammina (*Oral communication OP14)
  • Preliminary in silico -based insights on the functionality of CRISPR -Cas in M. tuberculosis complex. G. Refrégier*, M. Petrou, C. Sola (*Oral communication OP21)

- 2016 : MEEGID XIII : 13th International conference on molecular epidemiology and evolutionary genetics of infectious diseases. 10-13 May. Antwerp, Belgium.

  • Combining host and pathogen data to reconstruct tuberculosis evolution : linking back Turkish and Japanese history to modern or Paleolithic era ?
    G. Refregier*, E. Abadia, T. Matsumoto, H. Ano, T. Takashima, I. Tsuyuguchi, E. Aktas, E. Cömert, M. Gomgnimbou, S. Panaiotov, J. Phelan, F. Coll, R. McNerney, A. Pain, T. G. Clark, C. Sola (*Oral communication)
  • Mycobacterium tuberculosis East African Indian (EAI)- SNP diversity suggests common ancestry for Brazil-Pará and Malawi isolates potentially linked to slave trade. E.C. Conceição, X.O. Daragon, H. Gomes, G. Refrégier, F. Coll, N. Ratovonirina, V. Rasolofo-Razanamparany, M.L. Lopes, K.V. Lima, R. Duarte, D van Soolingen, S. Gagneux, C. Sola (*Oral communication)

- 2016 : 37th Annual Congress of the European Society of Mycobacteriology, Catania, Sicily, July 3rd-July 6th

  • “En route” towards an optimized high-throughput microbead-based genetic testing assay for Pyrazinamide resistance. H. M. Gomes*, S. Kacimi, C. Bel, B. Klotoe, P. Suffys, J. Werngren, M. Mansjö, P. Juren, M. Gomgnimbou, G. Refregier, S. Hoffner, C. Sola (*Oral communication)
  • Comparison between TB-SPRINT and TB-SNPID for molecular diagnostics, resistance and genotyping of Mycobacterium tuberculosis in a high Multi-drug resistant setting : Kazakhstan. E. Costa Conceiçao, S. Kacimi, H. Gomes, G. Refrégier, S. Sengstake, I. Bergval, A. Schuitema, M. Akhalaia, A. Alenova, E. Zholdybayeva, R. Anthony, C. Sola* (*Oral presentation)-*Development of a new high-throughput microbead-based method to detect fluoroquinolone and aminoglycoside drug resistance in Mycobacterium tuberculosis : TB-SPRINTplus. B. J. Klotoe, B. Molina, M. K. Gomgnimbou, J. Dominguez, G. Refrégier, C. Sola (Poster)

- 2017 : 38th Annual Congress of the European Society of Mycobacteriology, Croatia, Sibenik, June 25-June 28th

  • Transmission analysis of a multidrug-resistant Mycobacterium tuberculosis outbreak in Bulgaria. S. V. Panaiotov*, E. Bachiyska, S. Yordanova, D.M. Cirillo, E. Tagliani, A. Trovato, M. Rosaria de Filippo, G. Refrégier, C. Sola (Poster P150)
  • Higher frequency of Mycobacterium tuberculosis ancestral EAI strains in the norther region of Brazil as compared to previous studies in South America and Brazil. K. V. Batista Lima*, E. Conceição, M.L. Lopes Nalin Rastogi, D. Couvin, I. Perini Furlaneto, H. Magdinier Gomes, S.E. Gonçalves Vasconcellos, P.N. Suffys, M. Schneider, M. Silva de Sousa, C. Sola, R. Guimarães, R. Silva Duarte (Poster P37)
  • Rapid detection of IS6110 insertions in NTF-1 region, a first step toward high-throughput assays for molecular diagnostic and classification inside Beijing lineage (lineage 2) using microsphere- based flow cytometry. B. Klotoe, G. Refrégier, E. Shitikov, S. Kolchenko, I. Mokrousov, C. Sola (Poster P157)
  • Prevalence of Turkey’s major spoligotype-based families ; T1 and Turr and their association with drug resistance in South of Turkey. G. Yakici*, C. Sola, G. Refrégier, E. Conceição, B. Kayar, F. Köksal (Poster P179)

- 2017 : 45th Annual Congress of the Italian Society of Microbiology, Genova, September, 27th-30th

  • A snapshot of Mycobacterium tuberculosis complex isolates from Sicily, Italy, 2014-2015. C. Bonura*, C. Mammina, A. Casuccio, A. Agodi, T. M. Assunta Fasciana, R. Immordino, A. Aleo, C. Sola, G. Refrégier, the TB surveillance network in Sicily (Poster)

- 2018 : 39th Annual Congress of the European Society of Mycobacteriology, Dresden, Germany, June 25-June 28th

  • TB-ULTRA, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis Complex. B. J. Klotoe*, B. Molina-Moya, H. Magdinier Gomes, M. K. Gomgnimbou, L. Oliveira Suzarte, M.H. Féres Saad, S. Ali, J. Dominguez, E. Pimkina, E. Zholdybayeva, C. Sola, G. Refrégier (*Oral Presentation 15)
  • Using TBminer to dig into 24-MIRU-VNTR and/or spoligotyping data of M. tuberculosis and the Whole-Genome Sequence era, the example of Pseudo-Beijing. M. Yasmin, J. Azé, R. Tabassum Siddiqui
    S. Tahseen, S.A. Abbasi, N. Khan, R. Iqbal, C. Sola, G. Refrégier (Poster P194)
  • Phylogenetic assignment and drug resistance analysis of Mycobacterium tuberculosis from Mozambique and Brazil with Whole Genome Sequencing. V. Bollela, C. S. Feliciano, L. M.P. Anselmo, E. I. Namburete, E. C. Conceição, A. Dipenaar, R. M. Warren, C. Sola, W. Araujo Jr (Poster P109)
  • Genomic of MDR and XDR-TB in Kazakhstan by combination of high throughput methods. B. Klotoe, E. Conceição, S. Kacimi, S. Nurgul, H. Magdinier Gomes, S. Sengstake, A. Schuitema, A. Alenova, E. Zholdybayeva, R. Anthony, G. Refrégier, C. Sola (Poster P178)

- 2019 : 40th Annual Congress of the European Society of Mycobacteriology, Valencia, Spain, Sunday 30 June to Wednesday 3 July

  • Bridging WGS data with classical genotyping Mycobacterium tuberculosis profiles. G. Refrégier, C. Guyeux, C. Sola, J. Azé (Poster P151)

I undersigned, Christophe Sola certify the exactitude of all the informations contained above. Any mistake or omission is not done intentionally

Done in Paris on Nov 15th, 2019

Christophe Sola

par Communication - publié le