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Accueil > Départements > Biologie des Génomes > Daan NOORDERMEER : Dynamique de la Chromatine

Publications

2020

- Chang L-H and Noordermeer D (2020) Of dots and stripes : the morse code of Micro-C reveals the ultrastructure of transcriptional and architectural mammalian 3D genome organization, Molecular Cell 78, 376-378
https://pubmed.ncbi.nlm.nih.gov/32386540/

- Noordermeer D and Feil R (2020) Differential 3D chromatin organization and gene activity in genomic imprinting, Current Opinion in Genetics & Development 61, 17-24
https://pubmed.ncbi.nlm.nih.gov/32299027/

- Coker H, Wei G, Moindrot B, Mohammed S, Nesterova T and Brockdorff N (2020) The Role of the Xist 5’ m6A Region and RBM15 in X Chromosome Inactivation, Wellcome Open Research 5,31
https://pubmed.ncbi.nlm.nih.gov/32258426/

- Noordermeer D (2020) 3D genome organization : setting the stage and introducing its players, Briefings in Functional Genomics 19, 69-70
https://pubmed.ncbi.nlm.nih.gov/32239212/

- Chang L-H, Ghosh S and Noordermeer D (2020) TADs and their borders : free movement or building a wall ? Journal of Molecular Biology 432, 643-652
https://pubmed.ncbi.nlm.nih.gov/31887284/

2019

- Llères D, Moindrot B, Pathak R, Piras V, Matelot M, Pignard B, Marchand A, Poncelet M, Perrin A, Tellier V, Feil R and Noordermeer D (2019) CTCF controls imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains by modulating allele-specific sub-TAD structure, Genome Biology 20, 272
https://pubmed.ncbi.nlm.nih.gov/31831055/

- Nesterova TB, Wei G, Coker H, Pintacuda G, Bowness JS, Zhang T, Almeida M, Bloechl B, Moindrot B, Carter EJ, Alvarez Rodrigo I, Pan Q, Bi Y, Song CX and Brockdorff N (2019) Systematic allelic analysis defines the interplay of key pathways in X chromosome inactivation, Nature Communications 10, 3129
https://pubmed.ncbi.nlm.nih.gov/31311937/

- Shukron O, Piras V, Noordermeer D and Holcman D (2019) Statistics of chromatin organization during cell differentiation revealed by heterogeneous cross-linked polymers, Nature Communications 10, 2626
https://pubmed.ncbi.nlm.nih.gov/31201308/

- Greenberg MVC, Teissandier A, Walter M, Noordermeer and Bourc’his D (2019) Dynamic enhancer partitioning instructs activation of a growth-related gene during exit from naïve pluripotency, eLife 8, e44057
https://pubmed.ncbi.nlm.nih.gov/30990414/

2018

- Sobecki M, Souaid C, Boulay J, Guerineau V, D. Noordermeer and Crabbe L (2018) MadID, a Versatile Approach to Map Protein-DNA Interactions, Highlights Telomere-Nuclear Envelope Contact Sites in Human Cells, Cell Reports 25, 2891-2903.e5
https://pubmed.ncbi.nlm.nih.gov/30517874/

- Moindrot B and Brockdorff N (2018) Unbiased Genetic Screen to Identify Factors Involved in X-Chromosome Inactivation Using a Pooled Bar-Coded shRNA Library, Methods in Molecular Biology 1861, 19-36
https://pubmed.ncbi.nlm.nih.gov/30218356/

- Li L, Zeng Q, Bhutkar A, Galván JA, Karamitopoulou E, Noordermeer D, Peng MW, Piersigilli A, Perren A, Zlobec I, Robinson H, Iruela-Arispe ML and Hanahan D (2018) GKAP Acts as a Genetic Modulator of NMDAR Signaling to Govern Invasive Tumor Growth, Cancer Cell 33, 736-751.e5
https://pubmed.ncbi.nlm.nih.gov/29606348/

- Souaid C, Bloyer S and Noordermeer D (2018) Promoter–Enhancer Looping and Regulatory Neighborhoods, in Nuclear Architecture and Dynamics, Elsevier, pp. 435-456
https://www.sciencedirect.com/science/article/pii/B9780128034804000181

2017

- Pintacuda G, Wei G, Roustan C, Kirmizitas BA, Solcan N, Cerase A, Castello A, Mohammed S, Moindrot B, Nesterova TB, Brockdorff N (2017) hnRNPK Recruits PCGF3/5-PRC1 to the Xist RNA B-Repeat to Establish Polycomb-Mediated Chromosomal Silencing. Molecular Cell 68, 955-969.e10
https://pubmed.ncbi.nlm.nih.gov/29220657/

- Fabre PJ, Leleu M, Mormann BH, Lopez-Delisle L, Noordermeer D, Beccari L Duboule D (2017) Large scale genomic reorganization of topological domains at the HoxD locus. Genome Biology 18, 149
https://pubmed.ncbi.nlm.nih.gov/28784160/

- Thierion E, Le Men J, Collombet S, Hernandez C, Coulpier F, Torbey P, Thomas-Chollier M, Noordermeer D, Charnay P and Gilardi-Hebenstreit P (2017) Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements, PLoS Genetics 13, e1006903
https://pubmed.ncbi.nlm.nih.gov/28749941/

2016

- Matelot M and Noordermeer D (2016) Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq). Methods in Molecular Biology 1480, 223-241
https://pubmed.ncbi.nlm.nih.gov/27659989/

2015

- Vieux-Rochas M, Fabre PJ, Leleu M, Duboule D and Noordermeer D (2015) Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain. PNAS 112, 4672-4677
http://www.ncbi.nlm.nih.gov/pubmed/25825760

Publications majeures avant 2015

- Ghavi-Helm Y, Klein F, Pakozdi T, Ciglar L, Noordermeer D, Huber W and Furlong EEM (2014) Enhancer loops appear stable during development and are associated with paused polymerase. Nature 512, 96-100
http://www.ncbi.nlm.nih.gov/pubmed/25043061

- Noordermeer D, Leleu M, Schorderet P, Joye E, Chabaud F and Duboule D (2014) Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci. eLife 3, e02557
http://www.ncbi.nlm.nih.gov/pubmed/24843030

- Andrey G, Montavon T, Mascrez B, Gonzalez F, Noordermeer D, Leleu M, Trono D, Spitz F and Duboule D (2013) A functional switch between topological domains underlies HoxD genes collinearity in limbs. Science 340, 1195
http://www.ncbi.nlm.nih.gov/pubmed/23744951

- Coléno-Costes A, Jang SM, de Vanssay A, Rougeot J, Bouceba T, Randsholt NB, Gibert JM, Le Crom S, Mouchel-Vielh E, Bloyer S and Peronnet F (2012) New partners in regulation of gene expression : the enhancer of Trithorax and Polycomb Corto interacts with methylated ribosomal protein l12 via its chromodomain. PLoS Genetics 8, e1003006
http://www.ncbi.nlm.nih.gov/pubmed/23071455

- Debat V, Bloyer S, Faradji F, Gidaszewski N, Navarro N, Orozco-Terwengel P, Ribeiro V, Schlötterer C, Deutsch JS and Peronnet F (2011) Developmental stability : a major role for cyclin G in drosophila melanogaster. PLoS Genetics 7, e1002314
http://www.ncbi.nlm.nih.gov/pubmed/21998598

- Noordermeer D, Leleu M, Splinter E, Rougemont J, De Laat W and Duboule D (2011) The dynamic architecture of Hox gene clusters. Science 334, 222-225
http://www.ncbi.nlm.nih.gov/pubmed/21998387

- Noordermeer D, De Wit E, Klous P, Van De Werken H, Simonis M, Lopez-Jones M, Eussen B, De Klein A, Singer RH and De Laat W (2011) Variegated gene expression caused by cell-specific long-range DNA interactions. Nature Cell Biology 13, 944-951
http://www.ncbi.nlm.nih.gov/pubmed/21706023

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