Cytometry

Publications

  1. Siljak-Yakovlev, S. et al. Genome size of Balkan flora: a database (GeSDaBaF) and C-values for 51 taxa of which 46 are novel. Plant Syst Evol 306, 40 (2020).
  2. Sabeti Azad, M. et al. Fluorescent Aminoglycoside Antibiotics and Methods for Accurately Monitoring Uptake by Bacteria. ACS Infect. Dis. 6, 1008–1017 (2020).
  3. Quilbé, J. et al. Genetics of nodulation in Aeschynomene evenia uncovers new mechanisms of the rhizobium-legume symbiosis. http://biorxiv.org/lookup/doi/10.1101/2020.11.26.399428 (2020) doi:10.1101/2020.11.26.399428.
  4. Nicoud, Q. et al. Bradyrhizobium diazoefficiens USDA110 nodulation of Aeschynomene afraspera is associated with atypical terminal bacteroid differentiation and suboptimal symbiotic efficiency. http://biorxiv.org/lookup/doi/10.1101/2020.11.24.397182 (2020) doi:10.1101/2020.11.24.397182.
  5. Nicoud, Q. et al. Sinorhizobium meliloti functions required for resistance to antimicrobial NCR peptides and bacteroid differentiation. http://biorxiv.org/lookup/doi/10.1101/2020.12.04.412775 (2020) doi:10.1101/2020.12.04.412775.
  6. Mayol, J.-F., Laplace-Builhé, C. & Muller, C. D. La cytométrie en flux 2e édition. (Lavoisier -Tec & Doc, 2020).
  7. Farhat, P. et al. Gene flow between diploid and tetraploid junipers – two contrasting evolutionary pathways in two Juniperus populations. BMC Evol Biol 20, 148 (2020).
  8. Crisci, E. et al. Distinctive Cellular and Metabolic Reprogramming in Porcine Lung Mononuclear Phagocytes Infected With Type 1 PRRSV Strains. Front. Immunol. 11, 588411 (2020).
  9. Srisuwan, S. et al. Change in nuclear DNA content and pollen size with polyploidisation in the sweet potato ( Ipomoea batatas , Convolvulaceae ) complex. Plant Biol J 21, 237–247 (2019).
  10. Siljak-Yakovlev, S., Farhat, P., Valentin, N., Bareka, P. & Kamari, G. New estimates of nuclear DNA amount for 25 taxa from Kefallinia island. 22 (2019).
  11. Paalme, V. et al. Human Peripheral Blood Eosinophils Express High Levels of the Purinergic Receptor P2X4. Front. Immunol. 10, 2074 (2019).
  12. Le Cam, B. et al. Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis , Venturia pirina , Venturia aucupariae and Venturia asperata. G3 9, 2405–2414 (2019).
  13. Bordet, E. et al. Macrophage-B Cell Interactions in the Inverted Porcine Lymph Node and Their Response to Porcine Reproductive and Respiratory Syndrome Virus. Front. Immunol. 10, 953 (2019).
  14. RAFFOUX, X., BOURGE, M., DUMAS, F., MARTIN, O. & Falque, M. Role of cis, trans, and inbreeding effects on meiotic recombination in Saccharomyces cerevisiae. (2018) doi:10.1101/361428.
  15. Raffoux, X., Bourge, M., Dumas, F., Martin, O. C. & Falque, M. High-throughput measurement of recombination rates and genetic interference in Saccharomyces cerevisiae. Yeast 35, 431–442 (2018).
  16. Pirrello, J. et al. Transcriptome profiling of sorted endoreduplicated nuclei from tomato fruits: how the global shift in expression ascribed to DNA ploidy influences RNA-Seq data normalization and interpretation. The Plant Journal 93, 387–398 (2018).
  17. Malli, S., Bories, C., Bourge, M., Loiseau, Philippe. M. & Bouchemal, K. Surface-dependent endocytosis of poly(isobutylcyanoacrylate) nanoparticles by Trichomonas vaginalis. International Journal of Pharmaceutics 548, 276–287 (2018).
  18. Chaintreuil, C. et al. Naturally occurring variations in the nod-independent model legume Aeschynomene evenia and relatives: a resource for nodulation genetics. BMC Plant Biology 18, (2018).
  19. Bourge, M., Brown, S. C. & Siljak-Yakovlev, S. Flow cytometry as tool in plant sciences, with emphasis on genome size and ploidy level assessment. Genetics & Applications 2, 1 (2018).
  20. Bordet, E. et al. Porcine Reproductive and Respiratory Syndrome Virus Type 1.3 Lena Triggers Conventional Dendritic Cells 1 Activation and T Helper 1 Immune Response Without Infecting Dendritic Cells. Frontiers in Immunology 9, (2018).
  21. Pedroza-Garcia, J.-A. et al. Function of the plant DNA Polymerase epsilon in replicative stress sensing, a genetic analysis. Plant Physiol. (2017) doi:10.1104/pp.17.00031.
  22. Maisonnasse, P. et al. Pig as a biomedical model: Putting the porcine lung dendritic cells/macrophages network into light. Revue des Maladies Respiratoires 34, A328 (2017).
  23. Dambroise, E. et al. Postembryonic Fish Brain Proliferation Zones Exhibit Neuroepithelial-Type Gene Expression Profile. Stem Cells (2017) doi:10.1002/stem.2588.
  24. Brown, S. C. et al. DNA remodelling by Strict Partial Endoreplication in orchids, an original process in the plant kingdom. Genome Biol Evol (2017) doi:10.1093/gbe/evx063.
  25. Prasanphanich, A. F., White, D. E., Gran, M. A. & Kemp, M. L. Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay. PLoS Comput Biol 12, e1005188 (2016).
  26. Pedroza-Garcia, J. A. et al. Role of the Polymerase ϵ sub-unit DPB2 in DNA replication, cell cycle regulation and DNA damage response in Arabidopsis. Nucleic Acids Res 44, 7251–7266 (2016).
  27. Maisonnasse, P. et al. The respiratory DC/macrophage network at steady-state and upon influenza infection in the swine biomedical model. Mucosal Immunol 9, 835–849 (2016).
  28. Chaintreuil, C. et al. The evolutionary dynamics of ancient and recent polyploidy in the African semiaquatic species of the legume genus Aeschynomene. New Phytol 211, 1077–1091 (2016).
  29. Benincasa, M. et al. Single Cell Flow Cytometry Assay for Peptide Uptake by Bacteria. BIO-PROTOCOL 6, (2016).
  30. Vu Manh, T.-P. et al. Defining Mononuclear Phagocyte Subset Homology Across Several Distant Warm-Blooded Vertebrates Through Comparative Transcriptomics. Front Immunol 6, (2015).
  31. Moraes, A. P. et al. Evolutionary trends in Iridaceae: new cytogenetic findings from the New World. Bot J Linn Soc 177, 27–49 (2015).
  32. Jégu, T. et al. A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture. PLoS One 10, (2015).
  33. Hajrudinović, A. et al. When sexual meets apomict: genome size, ploidy level and reproductive mode variation of Sorbus aria s.l. and S. austriaca (Rosaceae) in Bosnia and Herzegovina. Ann Bot 116, 301–312 (2015).
  34. Guefrachi, I. et al. Bradyrhizobium BclA Is a Peptide Transporter Required for Bacterial Differentiation in Symbiosis with Aeschynomene Legumes. MPMI 28, 1155–1166 (2015).
  35. Bourge, M., Fort, C., Soler, M.-N., Satiat-Jeunemaître, B. & Brown, S. C. A pulse-chase strategy combining click-EdU and photoconvertible fluorescent reporter: tracking Golgi protein dynamics during the cell cycle. New Phytol 205, 938–950 (2015).
  36. Bourbousse, C. et al. Light signaling controls nuclear architecture reorganization during seedling establishment. Proc Natl Acad Sci U S A 112, E2836–E2844 (2015).
  37. Pirrello, J. et al. How fruit developmental biology makes use of flow cytometry approaches. Cytometry 85, 115–125 (2014).
  38. Marquet, F. et al. Pig Skin Includes Dendritic Cell Subsets Transcriptomically Related to Human CD1a and CD14 Dendritic Cells Presenting Different Migrating Behaviors and T Cell Activation Capacities. J Immunol 193, 5883–5893 (2014).
  39. Hudik, E. et al. Chloroplast Dysfunction Causes Multiple Defects in Cell Cycle Progression in the Arabidopsis crumpled leaf Mutant1[C][W]. Plant Physiol 166, 152–167 (2014).
  40. Ruscanu, S. et al. Dendritic Cell Subtypes from Lymph Nodes and Blood Show Contrasted Gene Expression Programs upon Bluetongue Virus Infection. J Virol 87, 9333–9343 (2013).
  41. Pustahija, F. et al. Small genomes dominate in plants growing on serpentine soils in West Balkans, an exhaustive study of 8 habitats covering 308 taxa. Plant Soil 373, 427–453 (2013).
  42. Pineau, B. et al. The Importance of Cardiolipin Synthase for Mitochondrial Ultrastructure, Respiratory Function, Plant Development, and Stress Responses in Arabidopsis. Plant Cell 25, 4195–4208 (2013).
  43. Jégu, T. et al. Multiple Functions of Kip-Related Protein5 Connect Endoreduplication and Cell Elongation[C][W]. Plant Physiol 161, 1694–1705 (2013).
  44. Dagher-Kharrat, M. B. et al. Nuclear DNA C-values for biodiversity screening: Case of the Lebanese flora. Plant Biosystems – An International Journal Dealing with all Aspects of Plant Biology 147, 1228–1237 (2013).
  45. Ruscanu, S. et al. The Double-Stranded RNA Bluetongue Virus Induces Type I Interferon in Plasmacytoid Dendritic Cells via a MYD88-Dependent TLR7/8-Independent Signaling Pathway. J Virol 86, 5817–5828 (2012).
  46. Razafinarivo, N. J. et al. Geographical gradients in the genome size variation of wild coffee trees (Coffea) native to Africa and Indian Ocean islands. Tree Genetics & Genomes 8, 1345–1358 (2012).
  47. Janski, N. et al. The GCP3-Interacting Proteins GIP1 and GIP2 Are Required for γ-Tubulin Complex Protein Localization, Spindle Integrity, and Chromosomal Stability[C][W]. Plant Cell 24, 1171–1187 (2012).
  48. Dufaÿ Wojcicki, A. et al. Hyaluronic acid-bearing lipoplexes: physico-chemical characterization and in vitro targeting of the CD44 receptor. J Control Release 162, 545–552 (2012).
  49. Domenichini, S. et al. Evidence for a Role of Arabidopsis CDT1 Proteins in Gametophyte Development and Maintenance of Genome Integrity[C][W]. Plant Cell 24, 2779–2791 (2012).
  50. Contreras, V. et al. Canine Recombinant Adenovirus Vector Induces an Immunogenicity-Related Gene Expression Profile in Skin-Migrated CD11b+ -Type DCs. PLoS One 7, (2012).
  51. Bourdon, M. et al. Evidence for karyoplasmic homeostasis during endoreduplication and a ploidy-dependent increase in gene transcription during tomato fruit growth. Development 139, 3817–3826 (2012).
  52. Perazza, D. et al. GeBP/GPL Transcription Factors Regulate a Subset of CPR5-Dependent Processes1[C][W]. Plant Physiol 157, 1232–1242 (2011).
  53. Aubert, A. et al. Sphingolipids involvement in plant endomembrane differentiation: the BY2 case. Plant J. 65, 958–971 (2011).
  54. Argout, X. et al. The genome of Theobroma cacao. Nat. Genet. 43, 101–108 (2011).
  55. Van de Velde, W. et al. Plant peptides govern terminal differentiation of bacteria in symbiosis. Science 327, 1122–1126 (2010).
  56. Grunwald, D. Cycle cellulaire et cytométrie en flux. (Tec et Doc, 2010).
  57. Bourge, M., Tlili, A., Dupré-Crochet, S., Nüβe, O. & Sulpice, J.-C. Amiloride derivatives modulate PS externalization in neutrophil-like PLB-985 cells. Biochemical Pharmacology 80, 1012–1020 (2010).
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