Bacteria and Archea
Radioresistance

Vauclare, Pierre, Jip Wulffelé, Françoise Lacroix, Pascale Servant, Fabrice Confalonieri, Jean-Philippe Kleman, Dominique Bourgeois, and Joanna Timmins. 2024. “Stress-Induced Nucleoid Remodeling in Deinococcus Radiodurans Is Associated with Major Changes in Heat Unstable (HU) Protein Dynamics.” Nucleic Acids Research, May, gkae379. https://doi.org/10.1093/nar/gkae379.

Rollo, Filipe, Guilherme D. Martins, André G. Gouveia, Solenne Ithurbide, Pascale Servant, Célia V. Romão, and Elin Moe. 2023. “Insights into the Role of Three Endonuclease III Enzymes for Oxidative Stress Resistance in the Extremely Radiation Resistant Bacterium Deinococcus Radiodurans.” Frontiers in Microbiology 14: 1266785. https://doi.org/10.3389/fmicb.2023.1266785.

Franck, Coste, Goffinont Stéphane, Cros Julien, Gaudon Virginie, Guérin Martine, Garnier Norbert, Fabrice Confalonieri, Flament Didier, Suskiewicz Marcin Josef, and Castaing Bertrand. 2022. “Structural and Functional Determinants of the Archaeal 8-Oxoguanine-DNA Glycosylase AGOG for DNA Damage Recognition and Processing.” Nucleic Acids Research, October, gkac932. https://doi.org/10.1093/nar/gkac932.

Eugénie, Nicolas, Yvan Zivanovic, Gaelle Lelandais, Geneviève Coste, Claire Bouthier de la Tour, Esma Bentchikou, Pascale Servant, and Fabrice Confalonieri. 2021. “Characterization of the Radiation Desiccation Response Regulon of the Radioresistant Bacterium Deinococcus Radiodurans by Integrative Genomic Analyses.” Cells 10 (10): 2536. https://doi.org/10.3390/cells10102536.

Tour, Claire Bouthier de la, Martine Mathieu, Pascale Servant, Geneviève Coste, Cédric Norais, and Fabrice Confalonieri. 2021. “Characterization of the DdrD Protein from the Extremely Radioresistant Bacterium Deinococcus Radiodurans.” Extremophiles, May. https://doi.org/10.1007/s00792-021-01233-0.

Alpha-Bazin, Béatrice, Aurore Gorlas, Arnaud Lagorce, Damien Joulié, Jean-Baptiste Boyer, Murielle Dutertre, Jean-Charles Gaillard, et al. 2021. “Lysine-Specific Acetylated Proteome from the Archaeon Thermococcus Gammatolerans Reveals the Presence of Acetylated Histones.” Journal of Proteomics 232 (February): 104044. https://doi.org/10.1016/j.jprot.2020.104044.

Saghaï, Aurélien, Yvan Zivanovic, David Moreira, Rosaluz Tavera, and Purificación López-García. 2020. “A Novel Microbialite-Associated Phototrophic Chloroflexi Lineage Exhibiting a Quasi-Clonal Pattern along Depth.” Genome Biology and Evolution 12 (7): 1207–16. https://doi.org/10.1093/gbe/evaa122.

Ithurbide, Solenne, Geneviève Coste, Johnny Lisboa, Nicolas Eugénie, Esma Bentchikou, Claire Bouthier de la Tour, Dominique Liger, et al. 2020. “Natural Transformation in Deinococcus Radiodurans: A Genetic Analysis Reveals the Major Roles of DprA, DdrB, RecA, RecF, and RecO Proteins.” Frontiers in Microbiology 11: 1253. https://doi.org/10.3389/fmicb.2020.01253.

Groot, Arjan de, Marina Siponen, Romaric Magerand, Nicolas Eugenie, Raquel Martin-Arevalillo, Jade Doloy, David Lemaire, et al. 2019. “Crystal Structure of the Transcriptional Repressor DdrO: Insight into the Metalloprotease/Repressor-Controlled Radiation Response in Deinococcus.” Nucleic Acids Research 47 (21): 11403–17. https://doi.org/10.1093/nar/gkz883.

Santos, Sandra P., Yang Yang, Margarida T. G. Rosa, Mafalda A. A. Rodrigues, Claire Bouthier de la Tour, Suzanne Sommer, Miguel Teixeira, et al. 2019. “The Interplay between Mn and Fe in Deinococcus Radiodurans Triggers Cellular Protection during Paraquat-Induced Oxidative Stress.” Scientific Reports 9 (1): 17217. https://doi.org/10.1038/s41598-019-53140-2.

Floc’h, Kevin, Françoise Lacroix, Pascale Servant, Yung-Sing Wong, Jean-Philippe Kleman, Dominique Bourgeois, and Joanna Timmins. 2019. “Cell Morphology and Nucleoid Dynamics in Dividing Deinococcus Radiodurans.” Nature Communications 10 (1): 3815. https://doi.org/10.1038/s41467-019-11725-5.

Devigne, Alice, Laura Meyer, Claire Bouthier de la Tour, Nicolas Eugenie, Suzanne Sommer, and Pascale Servant. 2019. “The Absence of the RecN Protein Suppresses the Cellular Defects of Deinococcus Radiodurans Irradiated Cells Devoid of the PprA Protein by Cheek Tot Limiting Recombinational Repair of DNA Lesions.” Dna Repair 73 (January): 144–54. https://doi.org/10.1016/j.dnarep.2018.11.011.

Ferrandi, Alex, Federica Gastoni, Mauro Pitaro, Sara Tagliaferri, Claire Bouthier de la Tour, Rosa Alduina, Suzanne Sommer, et al. 2019. “Deinococcus Radiodurans’ SRA-HNH Domain Containing Protein Shp (Dr1533) Is Involved in Faithful Genome Inheritance Maintenance Following DNA Damage.” Biochimica Et Biophysica Acta-General Subjects 1863 (1): 118–29. https://doi.org/10.1016/j.bbagen.2018.09.020.

Gutiérrez-Preciado, Ana, Aurélien Saghaï, David Moreira, Yvan Zivanovic, Philippe Deschamps, and Purificación López-García. 2018. “Functional Shifts in Microbial Mats Recapitulate Early Earth Metabolic Transitions.” Nature Ecology & Evolution 2 (11): 1700–1708. https://doi.org/10.1038/s41559-018-0683-3.

Floc’h, Kevin, Françoise Lacroix, Liliana Barbieri, Pascale Servant, Remi Galland, Corey Butler, Jean-Baptiste Sibarita, Dominique Bourgeois, and Joanna Timmins. 2018. “Bacterial Cell Wall Nanoimaging by Autoblinking Microscopy.” Scientific Reports 8 (1): 14038. https://doi.org/10.1038/s41598-018-32335-z.

Gorlas, Aurore, Pierre Jacquemot, Jean-Michel Guigner, Sukhvinder Gill, Patrick Forterre, and Francois Guyot. 2018. “Greigite Nanocrystals Produced by Hyperthermophilic Archaea of Thermococcales Order.” Plos One 13 (8): e0201549. https://doi.org/10.1371/journal.pone.0201549.

Meyer, Laura, Geneviève Coste, Suzanne Sommer, Jacques Oberto, Fabrice Confalonieri, Pascale Servant, and Cécile Pasternak. 2018. “DdrI, a CAMP Receptor Protein Family Member, Acts as a Major Regulator for Adaptation of Deinococcus Radiodurans to Various Stresses.” Journal of Bacteriology 200 (13): e00129-18. https://doi.org/10.1128/JB.00129-18.

Catchpole, Ryan, Aurore Gorlas, Jacques Oberto, and Patrick Forterre. 2018. “A Series of New E. Coli-Thermococcus Shuttle Vectors Compatible with Previously Existing Vectors.” Extremophiles: Life Under Extreme Conditions 22 (4): 591–98. https://doi.org/10.1007/s00792-018-1019-6.

Trias, Rosalia, Bénédicte Ménez, Paul le Campion, Yvan Zivanovic, Léna Lecourt, Aurélien Lecoeuvre, Philippe Schmitt-Kopplin, et al. 2017. “High Reactivity of Deep Biota under Anthropogenic CO2 Injection into Basalt.” Nature Communications 8 (1): 1063. https://doi.org/10.1038/s41467-017-01288-8.

Ponce-Toledo, Rafael I., Philippe Deschamps, Purificación López-García, Yvan Zivanovic, Karim Benzerara, and David Moreira. 2017. “An Early-Branching Freshwater Cyanobacterium at the Origin of Plastids.” Current Biology: CB 27 (3): 386–91. https://doi.org/10.1016/j.cub.2016.11.056.

Moreira, David, Rosaluz Tavera, Karim Benzerara, Fériel Skouri-Panet, Estelle Couradeau, Emmanuelle Gérard, Céline Loussert Fonta, Eberto Novelo, Yvan Zivanovic, and Purificación López-García. 2017. “Description of Gloeomargarita Lithophora Gen. Nov., Sp. Nov., a Thylakoid-Bearing, Basal-Branching Cyanobacterium with Intracellular Carbonates, and Proposal for Gloeomargaritales Ord. Nov.” International Journal of Systematic and Evolutionary Microbiology, 67 (3): 653–58. https://doi.org/10.1099/ijsem.0.001679.

Bouthier de la Tour, Claire, Martine Mathieu, Laura Meyer, Pauline Dupaigne, Fanny Passot, Pascale Servant, Suzanne Sommer, Eric Le Cam, and Fabrice Confalonieri. 2017. “In Vivo and in Vitro Characterization of DdrC, a DNA Damage Response Protein in Deinococcus Radiodurans Bacterium.” PloS One 12 (5): e0177751. https://doi.org/10.1371/journal.pone.0177751.

Li, Sha, Erika Porcel, Hynd Remita, Sergio Marco, Matthieu Réfrégiers, Murielle Dutertre, Fabrice Confalonieri, and Sandrine Lacombe. 2017. “Platinum Nanoparticles: An Exquisite Tool to Overcome Radioresistance.” Cancer Nanotechnology 8 (1): 4. https://doi.org/10.1186/s12645-017-0028-y.

Saghaï, Aurélien, Yvan Zivanovic, David Moreira, Karim Benzerara, Paola Bertolino, Marie Ragon, Rosaluz Tavera, Ana Isabel López-Archilla, and Purificación López-García. 2016. “Comparative Metagenomics Unveils Functions and Genome Features of Microbialite-Associated Communities along a Depth Gradient.” Environmental Microbiology 18 (12): 4990–5004. https://doi.org/10.1111/1462-2920.13456.

Barbier, Ewa, Arnaud Lagorce, Amine Hachemi, Murielle Dutertre, Aurore Gorlas, Lucie Morand, Christine Saint-Pierre, et al. 2016. “Oxidative DNA Damage and Repair in the Radioresistant Archaeon Thermococcus Gammatolerans.” Chemical Research in Toxicology 29 (11): 1796–1809. https://doi.org/10.1021/acs.chemrestox.6b00128.

Devigne, Alice, Philippe Guérin, Johnny Lisboa, Sophie Quevillon-Cheruel, Jean Armengaud, Suzanne Sommer, Claire Bouthier de la Tour, and Pascale Servant. 2016. “PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus Radiodurans Bacteria.” MSphere 1 (1). https://doi.org/10.1128/mSphere.00036-15.

Hoff, Grégory, Claire Bertrand, Lingli Zhang, Emilie Piotrowski, Ludovic Chipot, Cyril Bontemps, Fabrice Confalonieri, et al. 2016. “Multiple and Variable NHEJ-Like Genes Are Involved in Resistance to DNA Damage in Streptomyces Ambofaciens.” Frontiers in Microbiology 7: 1901. https://doi.org/10.3389/fmicb.2016.01901.

Bouthier de la Tour, Claire, Laurence Blanchard, Rémi Dulermo, Monika Ludanyi, Alice Devigne, Jean Armengaud, Suzanne Sommer, and Arjan de Groot. 2015. “The Abundant and Essential HU Proteins in Deinococcus Deserti and Deinococcus Radiodurans Are Translated from Leaderless MRNA.” Microbiology (Reading, England) 161 (12): 2410–22. https://doi.org/10.1099/mic.0.000186.

Ithurbide, Solenne, Esma Bentchikou, Geneviève Coste, Bruno Bost, Pascale Servant, and Suzanne Sommer. 2015. “Single Strand Annealing Plays a Major Role in RecA-Independent Recombination between Repeated Sequences in the Radioresistant Deinococcus Radiodurans Bacterium.” PLoS Genetics 11 (10): e1005636. https://doi.org/10.1371/journal.pgen.1005636.

Passot, Fanny Marie, Hong Ha Nguyen, Cloelia Dard-Dascot, Claude Thermes, Pascale Servant, Olivier Espéli, and Suzanne Sommer. 2015. “Nucleoid Organization in the Radioresistant Bacterium Deinococcus Radiodurans.” Molecular Microbiology 97 (4): 759–74. https://doi.org/10.1111/mmi.13064.

Devigne, Alice, Solenne Ithurbide, Claire Bouthier de la Tour, Fanny Passot, Martine Mathieu, Suzanne Sommer, and Pascale Servant. 2015. “DdrO Is an Essential Protein That Regulates the Radiation Desiccation Response and the Apoptotic-like Cell Death in the Radioresistant Deinococcus Radiodurans Bacterium.” Molecular Microbiology 96 (5): 1069–84. https://doi.org/10.1111/mmi.12991.

Yang, Yin-Shan, Bernard Fernandez, Arnaud Lagorce, Valérie Aloin, Karine Montet De Guillen, Jean-Baptiste Boyer, Alain Dedieu, Fabrice Confalonieri, Jean Armengaud, and Christian Roumestand. 2015. “Prioritizing Targets for Structural Biology through the Lens of Proteomics: The Archaeal Protein TGAM_1934 from Thermococcus Gammatolerans.” Proteomics 15 (1): 114–23. https://doi.org/10.1002/pmic.201300535.

López-García, Purificación, Yvan Zivanovic, Philippe Deschamps, and David Moreira. 2015. “Bacterial Gene Import and Mesophilic Adaptation in Archaea.” Nature Reviews. Microbiology 13 (7): 447–56. https://doi.org/10.1038/nrmicro3485.

Quaiser, Achim, Alexis Dufresne, Flore Ballaud, Simon Roux, Yvan Zivanovic, Jonathan Colombet, Télesphore Sime-Ngando, and André-Jean Francez. 2015. “Diversity and Comparative Genomics of Microviridae in Sphagnum- Dominated Peatlands.” Frontiers in Microbiology 6: 375. https://doi.org/10.3389/fmicb.2015.00375.

Saghaï, Aurélien, Yvan Zivanovic, Nina Zeyen, David Moreira, Karim Benzerara, Philippe Deschamps, Paola Bertolino, et al. 2015. “Metagenome-Based Diversity Analyses Suggest a Significant Contribution of Non-Cyanobacterial Lineages to Carbonate Precipitation in Modern Microbialites.” Frontiers in Microbiology 6: 797. https://doi.org/10.3389/fmicb.2015.00797.

Dulermo, Rémi, Takefumi Onodera, Geneviève Coste, Fanny Passot, Murielle Dutertre, Martine Porteron, Fabrice Confalonieri, Suzanne Sommer, and Cécile Pasternak. 2015. “Identification of New Genes Contributing to the Extreme Radioresistance of Deinococcus Radiodurans Using a Tn5-Based Transposon Mutant Library.” PloS One 10 (4): e0124358. https://doi.org/10.1371/journal.pone.0124358.