Chromatin Dynamics

Publications

Carlier, F., M. Li, L. Maroc, R. Debuchy, C. Souaid, D. Noordermeer, P. Grognet, and F. Malagnac. 2021. “Loss of EZH2-like or SU(VAR)3-9-like Proteins Causes Simultaneous Perturbations in H3K27 and H3K9 Tri-Methylation and Associated Developmental Defects in the Fungus Podospora Anserina.” Epigenetics & Chromatin 14 (1): 22. https://doi.org/10.1186/s13072-021-00395-7.
Arnould, Coline, Vincent Rocher, Anne-Laure Finoux, Thomas Clouaire, Kevin Li, Felix Zhou, Pierre Caron, et al. 2021. “Loop Extrusion as a Mechanism for Formation of DNA Damage Repair Foci.” Nature 590 (7847): 660–65. https://doi.org/10.1038/s41586-021-03193-z.
Chang, Li-Hsin, and Daan Noordermeer. 2020. “Of Dots and Stripes: The Morse Code of Micro-C Reveals the Ultrastructure of Transcriptional and Architectural Mammalian 3D Genome Organization.” Molecular Cell 78 (3): 376–78. https://doi.org/10.1016/j.molcel.2020.04.021.
Noordermeer, Daan, and Robert Feil. 2020. “Differential 3D Chromatin Organization and Gene Activity in Genomic Imprinting.” Current Opinion in Genetics & Development 61 (April): 17–24. https://doi.org/10.1016/j.gde.2020.03.004.
Noordermeer, Daan. 2020. “3D Genome Organization: Setting the Stage and Introducing Its Players.” Briefings in Functional Genomics 19 (2): 69–70. https://doi.org/10.1093/bfgp/elaa006.
Coker, Heather, Guifeng Wei, Benoit Moindrot, Shabaz Mohammed, Tatyana Nesterova, and Neil Brockdorff. 2020. “The Role of the Xist 5’ M6A Region and RBM15 in X Chromosome Inactivation.” Wellcome Open Research 5: 31. https://doi.org/10.12688/wellcomeopenres.15711.1.
Chang, Li-Hsin, Sourav Ghosh, and Daan Noordermeer. 2020. “TADs and Their Borders: Free Movement or Building a Wall?” Journal of Molecular Biology 432 (3): 643–52. https://doi.org/10.1016/j.jmb.2019.11.025.
Llères, David, Benoît Moindrot, Rakesh Pathak, Vincent Piras, Mélody Matelot, Benoît Pignard, Alice Marchand, et al. 2019. “CTCF Modulates Allele-Specific Sub-TAD Organization and Imprinted Gene Activity at the Mouse Dlk1-Dio3 and Igf2-H19 Domains.” Genome Biology 20 (1): 272. https://doi.org/10.1186/s13059-019-1896-8.
Nesterova, Tatyana B., Guifeng Wei, Heather Coker, Greta Pintacuda, Joseph S. Bowness, Tianyi Zhang, Mafalda Almeida, et al. 2019. “Systematic Allelic Analysis Defines the Interplay of Key Pathways in X Chromosome Inactivation.” Nature Communications 10 (1): 3129. https://doi.org/10.1038/s41467-019-11171-3.
Shukron, O., V. Piras, D. Noordermeer, and D. Holcman. 2019. “Statistics of Chromatin Organization during Cell Differentiation Revealed by Heterogeneous Cross-Linked Polymers.” Nature Communications 10 (1): 2626. https://doi.org/10.1038/s41467-019-10402-x.
Greenberg, Maxim Van Cleef, Aurélie Teissandier, Marius Walter, Daan Noordermeer, and Deborah Bourc’his. 2019. “Dynamic Enhancer Partitioning Instructs Activation of a Growth-Related Gene during Exit from Naïve Pluripotency.” ELife 8 (April): e44057. https://doi.org/10.7554/eLife.44057.
Sobecki, Michal, Charbel Souaid, Jocelyne Boulay, Vincent Guerineau, Daan Noordermeer, and Laure Crabbe. 2018. “MadID, a Versatile Approach to Map Protein-DNA Interactions, Highlights Telomere-Nuclear Envelope Contact Sites in Human Cells.” Cell Reports 25 (10): 2891-2903.e5. https://doi.org/10.1016/j.celrep.2018.11.027.
Li, Leanne, Qiqun Zeng, Arjun Bhutkar, José A. Galván, Eva Karamitopoulou, Daan Noordermeer, Mei-Wen Peng, et al. 2018. “GKAP Acts as a Genetic Modulator of NMDAR Signaling to Govern Invasive Tumor Growth.” Cancer Cell 33 (4): 736-751.e5. https://doi.org/10.1016/j.ccell.2018.02.011.
Moindrot, Benoit, and Neil Brockdorff. 2018. “Unbiased Genetic Screen to Identify Factors Involved in X-Chromosome Inactivation Using a Pooled Bar-Coded ShRNA Library.” Methods in Molecular Biology (Clifton, N.J.) 1861: 19–36. https://doi.org/10.1007/978-1-4939-8766-5_2.
Souaid, Charbel, Sébastien Bloyer, and Daan Noordermeer. 2018. “Promoter–Enhancer Looping and Regulatory Neighborhoods.” In Nuclear Architecture and Dynamics, 435–56. Elsevier. https://doi.org/10.1016/B978-0-12-803480-4.00018-1.
Fabre, Pierre J., Marion Leleu, Benjamin H. Mormann, Lucille Lopez-Delisle, Daan Noordermeer, Leonardo Beccari, and Denis Duboule. 2017. “Large Scale Genomic Reorganization of Topological Domains at the HoxD Locus.” Genome Biology 18 (1): 149. https://doi.org/10.1186/s13059-017-1278-z.
Thierion, Elodie, Johan Le Men, Samuel Collombet, Céline Hernandez, Fanny Coulpier, Patrick Torbey, Morgane Thomas-Chollier, Daan Noordermeer, Patrick Charnay, and Pascale Gilardi-Hebenstreit. 2017. “Krox20 Hindbrain Regulation Incorporates Multiple Modes of Cooperation between Cis-Acting Elements.” PLoS Genetics 13 (7): e1006903. https://doi.org/10.1371/journal.pgen.1006903.
Pintacuda, Greta, Guifeng Wei, Chloë Roustan, Burcu Anil Kirmizitas, Nicolae Solcan, Andrea Cerase, Alfredo Castello, et al. 2017. “HnRNPK Recruits PCGF3/5-PRC1 to the Xist RNA B-Repeat to Establish Polycomb-Mediated Chromosomal Silencing.” Molecular Cell 68 (5): 955-969.e10. https://doi.org/10.1016/j.molcel.2017.11.013.
Matelot, Mélody, and Daan Noordermeer. 2016. “Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-Seq).” Methods in Molecular Biology (Clifton, N.J.) 1480: 223–41. https://doi.org/10.1007/978-1-4939-6380-5_20.
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