Mammalian epigenomics

Nocente, Marina C., Anida Mesihovic Karamitsos, Emilie Drouineau, Manon Soleil, Waad Albawardi, Cécile Dulary, Florence Ribierre, et al. 2024. “CBAF Generates Subnucleosomes That Expand OCT4 Binding and Function beyond DNA Motifs at Enhancers.” Nature Structural & Molecular Biology, July. https://doi.org/10.1038/s41594-024-01344-0.

Haccard, Olivier, Diletta Ciardo, Hemalatha Narrissamprakash, Odile Bronchain, Akiko Kumagai, William G. Dunphy, Arach Goldar, and Kathrin Marheineke. 2023. “Rif1 Restrains the Rate of Replication Origin Firing in Xenopus Laevis.” Communications Biology 6 (1): 788. https://doi.org/10.1038/s42003-023-05172-8.

Meléndez García, Rodrigo, Olivier Haccard, Albert Chesneau, Hemalatha Narassimprakash, Jérôme Roger, Muriel Perron, Kathrin Marheineke, and Odile Bronchain. 2022. “A Non-Transcriptional Function of Yap Regulates the DNA Replication Program in Xenopus Laevis.” Edited by Sigolène M Meilhac and Jessica K Tyler. ELife 11 (July):e75741. https://doi.org/10.7554/eLife.75741.

García, Rodrigo Meléndez, Olivier Haccard, Albert Chesneau, Hemalatha Narassimprakash, Jérôme E. Roger, Muriel Perron, Kathrin Marheineke, and Odile Bronchain. 2021. “A Non-Transcriptional Function of Yap Orchestrates the DNA Replication Program.” bioRxiv. https://www.biorxiv.org/content/10.1101/2021.11.18.468628v1.

Ciardo, Diletta, Olivier Haccard, Hemalatha Narassimprakash, David Cornu, Ida Chiara Guerrera, Arach Goldar, and Kathrin Marheineke. 2021. “Polo-like Kinase 1 (Plk1) Regulates DNA Replication Origin Firing and Interacts with Rif1 in Xenopus.” Nucleic Acids Research 49 (17): 9851–69. https://doi.org/10.1093/nar/gkab756.

Ciardo, Diletta, Olivier Haccard, Hemalatha Narassimprakash, Jean-Michel Arbona, Olivier Hyrien, Benjamin Audit, Kathrin Marheineke, and Arach Goldar. 2021. “Organization of DNA Replication Origin Firing in Xenopus Egg Extracts: The Role of Intra-S Checkpoint.” Genes 12 (8): 1224. https://doi.org/10.3390/genes12081224.

Boudry, Pierre, Emma Piattelli, Emilie Drouineau, Johann Peltier, Anaïs Boutserin, Maxence Lejars, Eliane Hajnsdorf, et al. 2021. “Identification of RNAs Bound by Hfq Reveals Widespread RNA Partners and a Sporulation Regulator in the Human Pathogen Clostridioides Difficile.” RNA Biology, February, 1–22. https://doi.org/10.1080/15476286.2021.1882180.

Suissa, Laurent, Virginie Flachon, Jean-Marie Guigonis, Charles-Vivien Olivieri, Fanny Burel-Vandenbos, Julien Guglielmi, Damien Ambrosetti, et al. 2020. “Urinary Ketone Body Loss Leads to Degeneration of Brain White Matter in Elderly SLC5A8-Deficient Mice.” Journal of Cerebral Blood Flow & Metabolism 40 (8): 1709–23. https://doi.org/10.1177/0271678X19873662.

Ciardo, Diletta, Olivier Haccard, Hemalatha Narassimprakash, Virginie Chiodelli, Arach Goldar, and Kathrin Marheineke. 2020. “Polo-like Kinase 1 (Plk1) Is a Positive Regulator of DNA Replication in the Xenopus in Vitro System.” Cell Cycle (Georgetown, Tex.) 19 (14): 1817–32. https://doi.org/10.1080/15384101.2020.1782589.

Platel, Marie, Hemalatha Narassimprakash, Diletta Ciardo, Olivier Haccard, and Kathrin Marheineke. 2019. “Genome Wide Decrease of DNA Replication Eye Density at the Midblastula Transition of Xenopus Laevis.” Cell Cycle (Georgetown, Tex.) 18 (13): 1458–72. https://doi.org/10.1080/15384101.2019.1618641.

Ciardo, Diletta, Arach Goldar, and Kathrin Marheineke. 2019. “On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway.” Genes 10 (2): 94. https://doi.org/10.3390/genes10020094.

Mishra, Murli, Hong Jiang, Hedy A. Chawsheen, Matthieu Gerard, Michel B. Toledano, and Qiou Wei. 2018. “Nrf2-Activated Expression of Sulfiredoxin Contributes to Urethane-Induced Lung Tumorigenesis.” Cancer Letters 432 (September):216–26. https://doi.org/10.1016/j.canlet.2018.06.011.

Shiota, Hitoshi, Sophie Barral, Thierry Buchou, Minjia Tan, Yohann Couté, Guillaume Charbonnier, Nicolas Reynoird, et al. 2018. “Nut Directs P300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells.” Cell Reports 24 (13): 3477-3487.e6. https://doi.org/10.1016/j.celrep.2018.08.069.

Barral, Sophie, Yuichi Morozumi, Hiroki Tanaka, Emilie Montellier, Jérôme Govin, Maud de Dieuleveult, Guillaume Charbonnier, et al. 2017. “Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells.” Molecular Cell 66 (1): 89-101.e8. https://doi.org/10.1016/j.molcel.2017.02.025.

Berlivet, Soizik, Isabelle Hmitou, Hélène Picaud, and Matthieu Gérard. 2017. “Efficient Depletion of Essential Gene Products for Loss-of-Function Studies in Embryonic Stem Cells.” In RNAi and Small Regulatory RNAs in Stem Cells, edited by Baohong Zhang, 1622:91–100. New York, NY: Springer New York. https://doi.org/10.1007/978-1-4939-7108-4_7.

Morozumi, Yuichi, Fayçal Boussouar, Minjia Tan, Apirat Chaikuad, Mahya Jamshidikia, Gozde Colak, Huang He, et al. 2016. “Atad2 Is a Generalist Facilitator of Chromatin Dynamics in Embryonic Stem Cells.” Journal of Molecular Cell Biology 8 (4): 349–62. https://doi.org/10.1093/jmcb/mjv060.

Dieuleveult, Maud de, Kuangyu Yen, Isabelle Hmitou, Arnaud Depaux, Fayçal Boussouar, Daria Bou Dargham, Sylvie Jounier, et al. 2016. “Genome-Wide Nucleosome Specificity and Function of Chromatin Remodellers in ES Cells.” Nature 530 (7588): 113–16. https://doi.org/10.1038/nature16505.

Francelle, Laetitia, Laurie Galvan, Marie-Claude Gaillard, Martine Guillermier, Diane Houitte, Gilles Bonvento, Fanny Petit, et al. 2015. “Loss of the Thyroid Hormone-Binding Protein Crym Renders Striatal Neurons More Vulnerable to Mutant Huntingtin in Huntington’s Disease.” Human Molecular Genetics 24 (6): 1563–73. https://doi.org/10.1093/hmg/ddu571.

Francelle, Laetitia, Laurie Galvan, Marie-Claude Gaillard, Fanny Petit, Benoît Bernay, Martine Guillermier, Gilles Bonvento, et al. 2015. “Striatal Long Noncoding RNA Abhd11os Is Neuroprotective against an N-Terminal Fragment of Mutant Huntingtin in Vivo.” Neurobiology of Aging 36 (3): 1601.e7-16. https://doi.org/10.1016/j.neurobiolaging.2014.11.014.