Plant-Bacteria Interactions

Publications

Nicoud, Quentin, Quentin Barrière, Nicolas Busset, Sara Dendene, Dmitrii Travin, Mickaël Bourge, Romain Le Bars, et al. 2021. “Sinorhizobium Meliloti Functions Required for Resistance to Antimicrobial NCR Peptides and Bacteroid Differentiation.” MBio 12 (4): e0089521. https://doi.org/10.1128/mBio.00895-21.
diCenzo, George C., Lisa Cangioli, Quentin Nicoud, Janis H. T. Cheng, Matthew J. Blow, Nicole Shapiro, Tanja Woyke, et al. 2021. “DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago Spp.” https://doi.org/10.1101/2021.03.08.434416.
Bouznif, Besma, Benoit Alunni, Mohamed Mars, Jacqui A. Shykoff, Tatiana Timchenko, and Ricardo C. Rodríguez de la Vega. 2021. “Draft Genome Sequences of Nitrogen-Fixing Bradyrhizobia Isolated from Root Nodules of Peanut, Arachis Hypogaea, Cultivated in Southern Tunisia.” Microbiology Resource Announcements 10 (29): e0043421. https://doi.org/10.1128/MRA.00434-21.
Nicoud, Quentin, Florian Lamouche, Anaïs Chaumeret, Thierry Balliau, Romain Le Bars, Mickaël Bourge, Fabienne Pierre, et al. 2021. “Bradyrhizobium Diazoefficiens USDA110 Nodulation of Aeschynomene Afraspera Is Associated with Atypical Terminal Bacteroid Differentiation and Suboptimal Symbiotic Efficiency.” MSystems 6 (3): e01237-20. https://doi.org/10.1128/mSystems.01237-20.
Cigna, Jérémy, Angélique Laurent, Malgorzata Waleron, Krzysztof Waleron, Pauline Dewaegeneire, Jan van der Wolf, Didier Andrivon, Denis Faure, and Valérie Hélias. 2021. “European Population of Pectobacterium Punjabense: Genomic Diversity, Tuber Maceration Capacity and a Detection Tool for This Rarely Occurring Potato Pathogen.” Microorganisms 9 (4): 781. https://doi.org/10.3390/microorganisms9040781.
Jang, Seonghan, Peter Mergaert, Tsubasa Ohbayashi, Kota Ishigami, Shuji Shigenobu, Hideomi Itoh, and Yoshitomo Kikuchi. 2021. “Dual Oxidase Enables Insect Gut Symbiosis by Mediating Respiratory Network Formation.” Proceedings of the National Academy of Sciences of the United States of America 118 (10). https://doi.org/10.1073/pnas.2020922118.
Faure, Denis. 2021. “Is There a Unique Integration Mechanism of Agrobacterium T-DNA into a Plant Genome?” The New Phytologist 229 (5): 2386–88. https://doi.org/10.1111/nph.17184.
Thomas, John E., Bruno Gronenborn, Robert M. Harding, Bikash Mandal, Ioana Grigoras, John W. Randles, Yoshitaka Sano, et al. 2021. “ICTV Virus Taxonomy Profile: Nanoviridae.” The Journal of General Virology, January. https://doi.org/10.1099/jgv.0.001544.
Hermes, Cornelia, René Richarz, Daniel A. Wirtz, Julian Patt, Wiebke Hanke, Stefan Kehraus, Jan Hendrik Voß, et al. 2021. “Thioesterase-Mediated Side Chain Transesterification Generates Potent Gq Signaling Inhibitor FR900359.” Nature Communications 12 (1): 144. https://doi.org/10.1038/s41467-020-20418-3.
Padilla, Rosa, Vincent Gaillard, Thao Nhi Le, Floriant Bellvert, David Chapulliot, Xavier Nesme, Yves Dessaux, Ludovic Vial, Céline Lavire, and Isabelle Kerzaon. 2021. “Development and Validation of a UHPLC-ESI-QTOF Mass Spectrometry Method to Analyze Opines, Plant Biomarkers of Crown Gall or Hairy Root Diseases.” Journal of Chromatography B 1162 (January): 122458. https://doi.org/10.1016/j.jchromb.2020.122458.
Oulghazi, Said, Sohaib Sarfraz, Maja A. Zaczek-Moczydłowska, Slimane Khayi, Abdelaziz Ed-Dra, Yassir Lekbach, Katrina Campbell, Lucy Novungayo Moleleki, Richard O’Hanlon, and Denis Faure. 2021. “Pectobacterium Brasiliense: Genomics, Host Range and Disease Management.” Microorganisms 9 (1): 106. https://doi.org/10.3390/microorganisms9010106.
Blin, Pauline, Kévin Robic, Slimane Khayi, Jérémy Cigna, Euphrasie Munier, Pauline Dewaegeneire, Angélique Laurent, et al. 2021. “Pattern and Causes of the Establishment of the Invasive Bacterial Potato Pathogen Dickeya Solani and of the Maintenance of the Resident Pathogen D. Dianthicola.” Molecular Ecology 30 (2): 608–24. https://doi.org/https://doi.org/10.1111/mec.15751.
Blin, Pauline, Kévin Robic, Slimane Khayi, Jérémy Cigna, Euphrasie Munier, Pauline Dewaegeneire, Angélique Laurent, et al. 2020. “Pattern and Causes of the Establishment of the Invasive Bacterial Potato Pathogen Dickeya Solani and of the Maintenance of the Resident Pathogen D. Dianthicola.” Molecular Ecology, November. https://doi.org/10.1111/mec.15751.
Sarfraz, Sohaib, Saïd Oulghazi, Jérémy Cigna, Shahbaz Talib Sahi, Kashif Riaz, Muhammad Rizwan Tufail, Amna Fayyaz, et al. 2020. “Complete Genome Sequence of the Type Strain Pectobacterium Punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms.” Microbiology Resource Announcements 9 (32): e00420-20. https://doi.org/10.1128/MRA.00420-20.
Kikuchi, Yoshitomo, Tsubasa Ohbayashi, Seonghan Jang, and Peter Mergaert. 2020. “Burkholderia Insecticola Triggers Midgut Closure in the Bean Bug Riptortus Pedestris to Prevent Secondary Bacterial Infections of Midgut Crypts.” The ISME Journal 14 (7): 1627–38. https://doi.org/10.1038/s41396-020-0633-3.
Oulghazi, Saïd, Mohieddine Moumni, Slimane Khayi, Kévin Robic, Sohaib Sarfraz, Céline Lopez-Roques, Céline Vandecasteele, and Denis Faure. 2020. “Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco.” Microorganisms 8 (6): 895. https://doi.org/10.3390/microorganisms8060895.
Sarfraz, Sohaib, Shahbaz Talib Sahi, Saïd Oulghazi, Kashif Riaz, Nasir Ahmed Rajput, Muhammad Atiq, Muhammad Rizwan Tufail, Akhtar Hameed, and Denis Faure. 2020. “Species Diversity of Dickeya and Pectobacterium Causing Potato Blackleg Disease in Pakistan.” Plant Disease 104 (5): 1492–99. https://doi.org/10.1094/PDIS-08-19-1743-RE.
Rodríguez, Miguel, Marta Torres, Lydia Blanco, Victoria Béjar, Inmaculada Sampedro, and Inmaculada Llamas. 2020. “Plant Growth-Promoting Activity and Quorum Quenching-Mediated Biocontrol of Bacterial Phytopathogens by Pseudomonas Segetis Strain P6.” Scientific Reports 10 (1): 4121. https://doi.org/10.1038/s41598-020-61084-1.
Ohbayashi, Tsubasa, Peter Mergaert, and Yoshitomo Kikuchi. 2020. “Chapter Two - Host-Symbiont Specificity in Insects: Underpinning Mechanisms and Evolution.” In Advances in Insect Physiology, edited by Kerry M. Oliver and Jacob A. Russell, 58:27–62. Mechanisms Underlying Microbial Symbiosis. Academic Press. https://doi.org/10.1016/bs.aiip.2020.03.002.
Mergaert, Peter. 2020. “Chapter Six - Differentiation of Symbiotic Nodule Cells and Their Rhizobium Endosymbionts.” In Advances in Botanical Research, edited by Pierre Frendo, Florian Frugier, and Catherine Masson-Boivin, 94:149–80. Regulation of Nitrogen-Fixing Symbioses in Legumes. Academic Press. https://doi.org/10.1016/bs.abr.2019.09.008.
Mergaert, Peter, Attila Kereszt, and Eva Kondorosi. 2020. “Gene Expression in Nitrogen-Fixing Symbiotic Nodule Cells in Medicago Truncatula and Other Nodulating Plants.” The Plant Cell 32 (1): 42–68. https://doi.org/10.1105/tpc.19.00494.
Goto, Shiori, Tsubasa Ohbayashi, Kazutaka Takeshita, Teruo Sone, Yu Matsuura, Peter Mergaert, and Yoshitomo Kikuchi. 2020. “A Peptidoglycan Amidase Mutant of Burkholderia Insecticola Adapts an L-Form-like Shape in the Gut Symbiotic Organ of the Bean Bug Riptortus Pedestris.” Microbes and Environments 35 (4). https://doi.org/10.1264/jsme2.ME20107.
Lima, Rui M., Salome Kylarová, Peter Mergaert, and Éva Kondorosi. 2020. “Unexplored Arsenals of Legume Peptides With Potential for Their Applications in Medicine and Agriculture.” Frontiers in Microbiology 11: 1307. https://doi.org/10.3389/fmicb.2020.01307.
Vigouroux, Armelle, Jeanne Dore, Loic Marty, Magali Aumont-Nicaise, Pierre Legrand, Yves Dessaux, Ludovic Vial, and Solange Moréra. 2020. “Import Pathways of the Mannityl-Opines into the Bacterial Pathogen Agrobacterium Tumefaciens: Structural, Affinity and in Vivo Approaches.” The Biochemical Journal 477: 615–28. https://doi.org/10.1042/BCJ20190886.
Itoh, Hideomi, Seonghan Jang, Kazutaka Takeshita, Tsubasa Ohbayashi, Naomi Ohnishi, Xian-Ying Meng, Yasuo Mitani, and Yoshitomo Kikuchi. 2019. “Host-Symbiont Specificity Determined by Microbe-Microbe Competition in an Insect Gut.” Proceedings of the National Academy of Sciences of the United States of America 116 (45): 22673–82. https://doi.org/10.1073/pnas.1912397116.
Travin, Dmitrii Y., Zoe L. Watson, Mikhail Metelev, Fred R. Ward, Ilya A. Osterman, Irina M. Khven, Nelli F. Khabibullina, et al. 2019. “Structure of Ribosome-Bound Azole-Modified Peptide Phazolicin Rationalizes Its Species-Specific Mode of Bacterial Translation Inhibition.” Nature Communications 10 (1): 1–11. https://doi.org/10.1038/s41467-019-12589-5.
Teulet, Albin, Nicolas Busset, Joël Fardoux, Djamel Gully, Clémence Chaintreuil, Fabienne Cartieaux, Alain Jauneau, et al. 2019. “The Rhizobial Type III Effector ErnA Confers the Ability to Form Nodules in Legumes.” Proceedings of the National Academy of Sciences of the United States of America 116 (43): 21758–68. https://doi.org/10.1073/pnas.1904456116.
Portier, Perrine, Jacques Pédron, Géraldine Taghouti, Marion Fischer-Le Saux, Emma Caullireau, Claire Bertrand, Angélique Laurent, et al. 2019. “Elevation of Pectobacterium Carotovorum Subsp. Odoriferum to Species Level as Pectobacterium Odoriferum Sp. Nov., Proposal of Pectobacterium Brasiliense Sp. Nov. and Pectobacterium Actinidiae Sp. Nov., Emended Description of Pectobacterium Carotovorum and Description of Pectobacterium Versatile Sp. Nov., Isolated from Streams and Symptoms on Diverse Plants.” International Journal of Systematic and Evolutionary Microbiology 69 (10): 3207–16. https://doi.org/10.1099/ijsem.0.003611.
Lamouche, Florian, Anaïs Chaumeret, Ibtissem Guefrachi, Quentin Barrière, Olivier Pierre, Florence Guérard, Françoise Gilard, et al. 2019. “From Intracellular Bacteria to Differentiated Bacteroids: Transcriptome and Metabolome Analysis in Aeschynomene Nodules Using the Bradyrhizobium Sp. ORS285 BclA Mutant.” Journal of Bacteriology 201 (17): e00191-19. https://doi.org/10.1128/JB.00191-19.
Oulghazi, Saïd, Jacques Pédron, Jérémy Cigna, Yin Yin Lau, Mohieddine Moumni, Frédérique Van Gijsegem, Kok-Gan Chan, and Denis Faure. 2019. “Dickeya Undicola Sp. Nov., a Novel Species for Pectinolytic Isolates from Surface Waters in Europe and Asia.” International Journal of Systematic and Evolutionary Microbiology 69 (8): 2440–44. https://doi.org/10.1099/ijsem.0.003497.
Rubio, Tristan, Daniel Oyanedel, Yannick Labreuche, Eve Toulza, Xing Luo, Maxime Bruto, Cristian Chaparro, et al. 2019. “Species-Specific Mechanisms of Cytotoxicity toward Immune Cells Determine the Successful Outcome of Vibrio Infections.” Proceedings of the National Academy of Sciences of the United States of America 116 (28): 14238–47. https://doi.org/10.1073/pnas.1905747116.
Ohbayashi, Tsubasa, Hideomi Itoh, Joy Lachat, Yoshitomo Kikuchi, and Peter Mergaert. 2019. “Burkholderia Gut Symbionts Associated with European and Japanese Populations of the Dock Bug Coreus Marginatus (Coreoidea: Coreidae).” Microbes and Environments 34 (2): 219–22. https://doi.org/10.1264/jsme2.ME19011.
Ohbayashi, Tsubasa, Ryo Futahashi, Mia Terashima, Quentin Barrière, Florian Lamouche, Kazutaka Takeshita, Xian-Ying Meng, et al. 2019. “Comparative Cytology, Physiology and Transcriptomics of Burkholderia Insecticola in Symbiosis with the Bean Bug Riptortus Pedestris and in Culture.” The ISME Journal 13 (6): 1469–83. https://doi.org/10.1038/s41396-019-0361-8.
Torres, Marta, Yves Dessaux, and Inmaculada Llamas. 2019. “Saline Environments as a Source of Potential Quorum Sensing Disruptors to Control Bacterial Infections: A Review.” Marine Drugs 17 (3): 191. https://doi.org/10.3390/md17030191.
Rondeau, Marine, Qassim Esmaeel, Jérôme Crouzet, Pauline Blin, Isabelle Gosselin, Catherine Sarazin, Miguel Pernes, et al. 2019. “Biofilm Constructing Variants of Paraburkholderia Phytofirmans PsJN Outcompete the Wild-Type Form in Free-Living and Static Conditions but Not in Planta.” Applied and Environmental Microbiology 85 (11): e02670-18. https://doi.org/10.1128/AEM.02670-18.
Gonzalez-Mula, Almudena, Marta Torres, and Denis Faure. 2019. “Integrative and Deconvolution Omics Approaches to Uncover the Agrobacterium Tumefaciens Lifestyle in Plant Tumors.” Plant Signaling & Behavior 14 (3): e1581562. https://doi.org/10.1080/15592324.2019.1581562.
Raoul des Essarts, Yannick, Jacques Pédron, Pauline Blin, Erwin Van Dijk, Denis Faure, and Frédérique Van Gijsegem. 2019. “Common and Distinctive Adaptive Traits Expressed in Dickeya Dianthicola and Dickeya Solani Pathogens When Exploiting Potato Plant Host.” Environmental Microbiology 21 (3): 1004–18. https://doi.org/10.1111/1462-2920.14519.
Reina, José Carlos, Marta Torres, and Inmaculada Llamas. 2019. “Stenotrophomonas Maltophilia AHL-Degrading Strains Isolated from Marine Invertebrate Microbiota Attenuate the Virulence of Pectobacterium Carotovorum and Vibrio Coralliilyticus.” Marine Biotechnology (New York, N.Y.) 21 (February): 276–90. https://doi.org/10.1007/s10126-019-09879-w.
Knierim, Dennis, Quentin Barrière, Ioana Grigoras, Stephan Winter, Heinrich-Josef Vetten, Mark Schwinghamer, John Thomas, Paul Chu, Bruno Gronenborn, and Tatiana Timchenko. 2019. “Subterranean Clover Stunt Virus Revisited: Detection of Two Missing Genome Components.” Viruses 11 (2): 138. https://doi.org/10.3390/v11020138.
Torres, Marta, Kar-Wai Hong, Teik-Min Chong, José Carlos Reina, Kok-Gan Chan, Yves Dessaux, and Inmaculada Llamas. 2019. “Genomic Analyses of Two Alteromonas Stellipolaris Strains Reveal Traits with Potential Biotechnological Applications.” Scientific Reports 9 (1): 1215. https://doi.org/10.1038/s41598-018-37720-2.
Oulghazi, Said, Jeremy Cigna, Yin Yin Lau, Mohieddine Moumni, Kok Gan Chan, and Denis Faure. 2019. “Transfer of the Waterfall Source Isolate Pectobacterium Carotovorum M022 to Pectobacterium Fontis Sp. Nov., a Deep-Branching Species within the Genus Pectobacterium.” International Journal of Systematic and Evolutionary Microbiology 69 (2): 470–75. https://doi.org/10.1099/ijsem.0.003180.
Marty, Loïc, Armelle Vigouroux, Magali Aumont-Nicaise, Franck Pelissier, Thibault Meyer, Céline Lavire Lavire, Yves Dessaux, and Solange Moréra. 2019. “Structural Basis for Two Efficient Modes of Agropinic Acid Opine Import into the Bacterial Pathogen Agrobacterium Tumefaciens.” The Biochemical Journal 476 (January): 165–78. https://doi.org/10.1042/BCJ20180861.
Gonzalez-Mula, Almudena, Joy Lachat, Léo Mathias, Delphine Naquin, Florian Lamouche, Peter Mergaert, and Denis Faure. 2019. “The Biotroph Agrobacterium Tumefaciens Thrives in Tumors by Exploiting a Wide Spectrum of Plant Host Metabolites.” The New Phytologist 222 (1): 455–67. https://doi.org/10.1111/nph.15598.
Haag, Andreas F., and Peter Mergaert. 2019. “Terminal Bacteroid Differentiation in the Medicago–Rhizobium Interaction – a Tug of War between Plant and Bacteria.” In The Model Legume Medicago Truncatula, 600–616. John Wiley & Sons, Ltd. https://doi.org/10.1002/9781119409144.ch75.
Lamouche, Florian, Djamel Gully, Anaïs Chaumeret, Nico Nouwen, Camille Verly, Olivier Pierre, Coline Sciallano, et al. 2019. “Transcriptomic Dissection of Bradyrhizobium Sp. Strain ORS285 in Symbiosis with Aeschynomene Spp. Inducing Different Bacteroid Morphotypes with Contrasted Symbiotic Efficiency.” Environmental Microbiology 21 (9): 3244–58. https://doi.org/10.1111/1462-2920.14292.
Bouznif, Besma, Ibtissem Guefrachi, Ricardo C. Rodríguez de la Vega, Mariangela Hungria, Mohamed Mars, Benoit Alunni, and Jacqui Anne Shykoff. 2019. “Phylogeography of the Bradyrhizobium Spp. Associated With Peanut, Arachis Hypogaea: Fellow Travelers or New Associations?” Frontiers in Microbiology 10: 2041. https://doi.org/10.3389/fmicb.2019.02041.
Sarfraz, Sohaib, Shahbaz Talib Sahi, Muhammad Amjad Ali, Sultan Habibullah Khan, and Denis Faure. 2019. “Antagonistic Potential of N-Acyl-Homoserine Lactone Degrading Bacillus Species for Controlling Pectobacterium Based Infections in Potato.” International Journal of Agriculture & Biology 22 (4): 639–46. https://doi.org/10.17957/IJAB/15.1110.
Lamouche, Florian, Nolwenn Bonadé-Bottino, Peter Mergaert, and Benoit Alunni. 2019. “Symbiotic Efficiency of Spherical and Elongated Bacteroids in the Aeschynomene-Bradyrhizobium Symbiosis.” Frontiers in Plant Science 10: 377. https://doi.org/10.3389/fpls.2019.00377.
Sarfraz, Sohaib, Kashif Riaz, Said Oulghazi, Jeremy Cigna, Shahbaz Talib Sahi, Sultan Habibullah Khan, and Denis Faure. 2018. “Pectobacterium Punjabense Sp Nov., Isolated from Blackleg Symptoms of Potato Plants in Pakistan.” International Journal of Systematic and Evolutionary Microbiology 68 (11): 3551–56. https://doi.org/10.1099/ijsem.0.003029.
Mardirossian, Mario, Quentin Barrière, Tatiana Timchenko, Claudia Müller, Sabrina Pacor, Peter Mergaert, Marco Scocchi, and Daniel N. Wilson. 2018. “Fragments of the Nonlytic Proline-Rich Antimicrobial Peptide Bac5 Kill Escherichia Coli Cells by Inhibiting Protein Synthesis.” Antimicrobial Agents and Chemotherapy 62 (8): e00534-18. https://doi.org/10.1128/AAC.00534-18.
Scroll to Top