Signaling and Regulatory Network in Bacteria

Publications

Bossi, Lionello, Nara Figueroa-Bossi, Philippe Bouloc, and Marc Boudvillain. 2020. “Regulatory Interplay between Small RNAs and Transcription Termination Factor Rho.” Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1863 (7): 194546. https://doi.org/10.1016/j.bbagrm.2020.194546.
Lacoux, Caroline, Aymeric Fouquier d’Hérouël, Françoise Wessner-Le Bohec, Nicolas Innocenti, Chantal Bohn, Sean P. Kennedy, Tatiana Rochat, et al. 2020. “Dynamic Insights on Transcription Initiation and RNA Processing during Bacterial Adaptation.” RNA (New York, N.Y.) 26 (4): 382–95. https://doi.org/10.1261/rna.073288.119.
Liu, Wenfeng, Pierre Boudry, Chantal Bohn, and Philippe Bouloc. 2020. “Staphylococcus Aureus Pigmentation Is Not Controlled by Hfq.” BMC Research Notes 13 (1): 63. https://doi.org/10.1186/s13104-020-4934-4.
Deng, Yiqin, Xing Luo, Mei Xie, Philippe Bouloc, Chang Chen, and Annick Jacq. 2019. “The IlvGMEDA Operon Is Regulated by Transcription Attenuation in Vibrio Alginolyticus ZJ-T.” Applied and Environmental Microbiology 85 (19): e00880-19. https://doi.org/10.1128/AEM.00880-19.
Rubio, Tristan, Daniel Oyanedel, Yannick Labreuche, Eve Toulza, Xing Luo, Maxime Bruto, Cristian Chaparro, et al. 2019. “Species-Specific Mechanisms of Cytotoxicity toward Immune Cells Determine the Successful Outcome of Vibrio Infections.” Proceedings of the National Academy of Sciences of the United States of America 116 (28): 14238–47. https://doi.org/10.1073/pnas.1905747116.
Briand, William, Ousmane Dao, Guillaume Garnier, Raphaël Guegan, Britany Marta, Clémence Maupu, Julie Miesch, et al. 2018. “Dégradation d’un anticancéreux dans les eaux usées - Une médaille d’or pour l’équipe GO Paris-Saclay.” Medecine Sciences: M/S 34 (12): 1111–14. https://doi.org/10.1051/medsci/2018304.
Nguyen, An Ngoc, Elena Disconzi, Guillaume M. Charriere, Delphine Destoumieux-Garzon, Philippe Bouloc, Frederique Le Roux, and Annick Jacq. 2018. “CsrB Gene Duplication Drives the Evolution of Redundant Regulatory Pathways Controlling Expression of the Major Toxic Secreted Metalloproteases in Vibrio Tasmaniensis LGP32.” Msphere 3 (6): e00582-18. https://doi.org/10.1128/mSphere.00582-18.
Rochat, Tatiana, Chantal Bohn, Claire Morvan, Thao Nguyen Le Lam, Fareha Razvi, Adrien Pain, Claire Toffano-Nioche, et al. 2018. “The Conserved Regulatory RNA RsaE Down-Regulates the Arginine Degradation Pathway in Staphylococcus Aureus.” Nucleic Acids Research 46 (17): 8803–16. https://doi.org/10.1093/nar/gky584.
Raghunathan, Nalini, Rajvardhan M Kapshikar, Jakku K Leela, Jillella Mallikarjun, Philippe Bouloc, and Jayaraman Gowrishankar. 2018. “Genome-Wide Relationship between R-Loop Formation and Antisense Transcription in Escherichia Coli.” Nucleic Acids Research 46 (7): 3400–3411. https://doi.org/10.1093/nar/gky118.
Dias, Graciela M., Adeline Bidault, Patrick Le Chevalier, Gwenaëlle Choquet, Clio Der Sarkissian, Ludovic Orlando, Claudine Medigue, et al. 2018. “Vibrio Tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs.” Frontiers in Microbiology 9: 227. https://doi.org/10.3389/fmicb.2018.00227.
Liu, Wenfeng, Tatiana Rochat, Claire Toffano-Nioche, Thao Nguyen Le Lam, Philippe Bouloc, and Claire Morvan. 2018. “Assessment of Bona Fide SRNAs in Staphylococcus Aureus.” Frontiers in Microbiology 9: 228. https://doi.org/10.3389/fmicb.2018.00228.
Richarme, Gilbert, Cailing Liu, Mouadh Mihoub, Jad Abdallah, Thibaut Leger, Nicolas Joly, Jean-Claude Liebart, et al. 2017. “Guanine Glycation Repair by DJ-1/Park7 and Its Bacterial Homologs.” Science 357 (6347): 208–11. https://doi.org/10.1126/science.aag1095.
Le Lam, Thao Nguyen, Claire Morvan, Wenfeng Liu, Chantal Bohn, Yan Jaszczyszyn, and Philippe Bouloc. 2017. “Finding SRNA-Associated Phenotypes by Competition Assays: An Example with Staphylococcus Aureus.” Methods 117: 21–27. https://doi.org/10.1016/j.ymeth.2016.11.018.
Felden, Brice, and Philippe Bouloc. 2017. “Regulatory RNAs in Bacteria: From Identification to Function.” Methods 117: 1–2. https://doi.org/10.1016/j.ymeth.2017.03.018.
Bouloc, Philippe, and Francis Repoila. 2016. “Fresh Layers of RNA-Mediated Regulation in Gram-Positive Bacteria.” Current Opinion in Microbiology 30 (April): 30–35. https://doi.org/10.1016/j.mib.2015.12.008.
Vanhove, Audrey S., Tristan P. Rubio, An N. Nguyen, Astrid Lemire, David Roche, Julie Nicod, Agnès Vergnes, et al. 2016. “Copper Homeostasis at the Host Vibrio Interface: Lessons from Intracellular Vibrio Transcriptomics.” Environmental Microbiology 18 (3): 875–88. https://doi.org/10.1111/1462-2920.13083.
Vingadassalon, Audrey, Philippe Bouloc, and Sylvie Rimsky. 2016. “Removing Nucleic Acids from Nucleoid-Associated Proteins Purified by Affinity Column.” Journal of Biological Methods 3 (1): e35. https://doi.org/10.14440/jbm.2016.98.
Deng, Yiqin, Chang Chen, Zhe Zhao, Jingjing Zhao, Annick Jacq, Xiaochun Huang, and Yiying Yang. 2016. “The RNA Chaperone Hfq Is Involved in Colony Morphology, Nutrient Utilization and Oxidative and Envelope Stress Response in Vibrio Alginolyticus.” PloS One 11 (9): e0163689. https://doi.org/10.1371/journal.pone.0163689.
Messaoudi, Nadia, Valérie Gautier, Julien Dairou, Mouhad Mihoub, Gaëlle Lelandais, Philippe Bouloc, Ahmed Landoulsi, and Gilbert Richarme. 2015. “Fermentation and Alternative Respiration Compensate for NADH Dehydrogenase Deficiency in a Prokaryotic Model of DJ-1-Associated Parkinsonism.” Microbiology (Reading, England) 161 (11): 2220–31. https://doi.org/10.1099/mic.0.000181.
Goudenège, David, Marie Agnès Travers, Astrid Lemire, Bruno Petton, Philippe Haffner, Yannick Labreuche, Delphine Tourbiez, et al. 2015. “A Single Regulatory Gene Is Sufficient to Alter Vibrio Aestuarianus Pathogenicity in Oysters.” Environmental Microbiology 17 (11): 4189–99. https://doi.org/10.1111/1462-2920.12699.
Rosinski-Chupin, Isabelle, Elisabeth Sauvage, Odile Sismeiro, Adrien Villain, Violette Da Cunha, Marie-Elise Caliot, Marie-Agnès Dillies, et al. 2015. “Single Nucleotide Resolution RNA-Seq Uncovers New Regulatory Mechanisms in the Opportunistic Pathogen Streptococcus Agalactiae.” BMC Genomics 16 (May): 419. https://doi.org/10.1186/s12864-015-1583-4.
Innocenti, Nicolas, Monica Golumbeanu, Aymeric Fouquier d’Hérouël, Caroline Lacoux, Rémy A. Bonnin, Sean P. Kennedy, Françoise Wessner, et al. 2015. “Whole-Genome Mapping of 5’ RNA Ends in Bacteria by Tagged Sequencing: A Comprehensive View in Enterococcus Faecalis.” RNA (New York, N.Y.) 21 (5): 1018–30. https://doi.org/10.1261/rna.048470.114.
Rochat, Tatiana, Olivier Delumeau, Nara Figueroa-Bossi, Philippe Noirot, Lionello Bossi, Etienne Dervyn, and Philippe Bouloc. 2015. “Tracking the Elusive Function of Bacillus Subtilis Hfq.” PloS One 10 (4): e0124977. https://doi.org/10.1371/journal.pone.0124977.
Pain, Adrien, Alban Ott, Hamza Amine, Tatiana Rochat, Philippe Bouloc, and Daniel Gautheret. 2015. “An Assessment of Bacterial Small RNA Target Prediction Programs.” RNA Biology 12 (5): 509–13. https://doi.org/10.1080/15476286.2015.1020269.
Bonnin, Rémy A., and Philippe Bouloc. 2015. “RNA Degradation in Staphylococcus Aureus: Diversity of Ribonucleases and Their Impact.” International Journal of Genomics 2015: 395753. https://doi.org/10.1155/2015/395753.
Le Roux, Frédérique, K. Mathias Wegner, Craig Baker-Austin, Luigi Vezzulli, Carlos R. Osorio, Carmen Amaro, Jennifer M. Ritchie, et al. 2015. “The Emergence of Vibrio Pathogens in Europe: Ecology, Evolution, and Pathogenesis (Paris, 11-12th March 2015).” Frontiers in Microbiology 6: 830. https://doi.org/10.3389/fmicb.2015.00830.
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