Facilities

Publications

Publications in 2022
0
2020 - 2022
2015 - 2019
Bousmah, Yasmina, Magali Noiray, Hadrien Jalaber, Hélène Pasquier, Marie Béatrice Valerio-Lepiniec, Agathe Urvoas, and Marie Erard. 2024. “PH Sensitivity of YFPs Is Reduced upon AlphaRep Binding: Proof of Concept in Vitro and in Living Cells.” Chembiochem: A European Journal of Chemical Biology, July, e202400287. https://doi.org/10.1002/cbic.202400287.
Perrier, Aurélien, Nadège Guiglielmoni, Delphine Naquin, Kevin Gorrichon, Claude Thermes, Sonia Lameiras, Alexander Dammermann, et al. 2024. “Maternal Inheritance of Functional Centrioles in Two Parthenogenetic Nematodes.” Nature Communications 15 (1): 6042. https://doi.org/10.1038/s41467-024-50427-5.
Mance, Lucija, Nicolas Bigot, Edison Zhamungui Sánchez, Franck Coste, Natalia Martín-González, Siham Zentout, Marin Biliškov, et al. 2024. “Dynamic BTB-Domain Filaments Promote Clustering of ZBTB Proteins.” Molecular Cell 84 (13): 2490-2510.e9. https://doi.org/10.1016/j.molcel.2024.05.029.
An, Jing, Rim Brik Chaouche, Leonardo I. Pereyra-Bistraín, Hugo Zalzalé, Qingyi Wang, Ying Huang, Xiaoning He, et al. 2024. “An Atlas of the Tomato Epigenome Reveals That KRYPTONITE Shapes TAD-like Boundaries through the Control of H3K9ac Distribution.” Proceedings of the National Academy of Sciences of the United States of America 121 (28): e2400737121. https://doi.org/10.1073/pnas.2400737121.
Streckaite, Simona, Cristian Ilioaia, Igor Chaussavoine, Jevgenij Chmeliov, Andrius Gelzinis, Dmitrij Frolov, Leonas Valkunas, Sylvie Rimsky, Andrew Gall, and Bruno Robert. 2024. “Functional Organization of 3D Plant Thylakoid Membranes as Seen by High Resolution Microscopy.” Biochimica Et Biophysica Acta. Bioenergetics, July, 149493. https://doi.org/10.1016/j.bbabio.2024.149493.
Nocente, Marina C., Anida Mesihovic Karamitsos, Emilie Drouineau, Manon Soleil, Waad Albawardi, Cécile Dulary, Florence Ribierre, et al. 2024. “CBAF Generates Subnucleosomes That Expand OCT4 Binding and Function beyond DNA Motifs at Enhancers.” Nature Structural & Molecular Biology, July. https://doi.org/10.1038/s41594-024-01344-0.
Saudrais, Florent, Marion Schvartz, Jean-Philippe Renault, Jorge Vieira, Stéphanie Devineau, Jocelyne Leroy, Olivier Taché, Yves Boulard, and Serge Pin. 2024. “The Impact of Virgin and Aged Microstructured Plastics on Proteins: The Case of Hemoglobin Adsorption and Oxygenation.” International Journal of Molecular Sciences 25 (13): 7047. https://doi.org/10.3390/ijms25137047.
Lachat, Joy, Gaëlle Lextrait, Romain Jouan, Amira Boukherissa, Aya Yokota, Seonghan Jang, Kota Ishigami, et al. 2024. “Hundreds of Antimicrobial Peptides Create a Selective Barrier for Insect Gut Symbionts.” Proceedings of the National Academy of Sciences of the United States of America 121 (25): e2401802121. https://doi.org/10.1073/pnas.2401802121.
O, Saatci, Alam R, Huynh-Dam Kt, Isik A, Uner M, Belder N, Ersan Pg, et al. 2024. “Targeting LINC00152 Activates CAMP/Ca2+/Ferroptosis Axis and Overcomes Tamoxifen Resistance in ER+ Breast Cancer.” Cell Death & Disease 15 (6). https://doi.org/10.1038/s41419-024-06814-3.
Barrault, Maxime, Svetlana Chabelskaya, Rodrigo H. Coronel-Tellez, Claire Toffano-Nioche, Eric Jacquet, and Philippe Bouloc. 2024. “Staphylococcal Aconitase Expression during Iron Deficiency Is Controlled by an SRNA-Driven Feedforward Loop and Moonlighting Activity.” Nucleic Acids Research, June, gkae506. https://doi.org/10.1093/nar/gkae506.
Nicolas, Yoann, Hélène Bret, Elda Cannavo, Ananya Acharya, Petr Cejka, Valérie Borde, and Raphaël Guerois. 2024. “Molecular Insights into the Activation of Mre11-Rad50 Endonuclease Activity by Sae2/CtIP.” Molecular Cell, June, S1097-2765(24)00442-8. https://doi.org/10.1016/j.molcel.2024.05.019.
Miron, Simona, Pierre Legrand, Pauline Dupaigne, Sari E. van Rossum-Fikkert, Dejan Ristic, Atifa Majeed, Roland Kanaar, Sophie Zinn-Justin, and Alex N. Zelensky. 2024. “DMC1 and RAD51 Bind FxxA and FxPP Motifs of BRCA2 via Two Separate Interfaces.” Nucleic Acids Research, June, gkae452. https://doi.org/10.1093/nar/gkae452.
Haas, Drago, Matthieu Barba, Cláudia M. Vicente, Šarká Nezbedová, Amélie Garénaux, Stéphanie Bury-Moné, Jean-Noël Lorenzi, et al. 2024. “Synteruptor: Mining Genomic Islands for Non-Classical Specialized Metabolite Gene Clusters.” NAR Genomics and Bioinformatics 6 (2): lqae069. https://doi.org/10.1093/nargab/lqae069.
Giacalone, Giovanna, Marion Quaillet, Nicolas Huang, Valérie Nicolas, Claire Boulogne, Cynthia Gillet, Elias Fattal, Amélie Bochot, and Hervé Hillaireau. 2024. “An Injectable, Nanostructured Implant for the Delivery of Adenosine Triphosphate: Towards Long-Acting Formulations of Small, Hydrophilic Drugs.” Drug Delivery and Translational Research, May. https://doi.org/10.1007/s13346-024-01631-9.
González-Reyes, Mayram, Jorge Aragón, Alejandra Sánchez-Trujillo, Griselda Rodríguez-Martínez, Kevin Duarte, Evangelia Eleftheriou, Jean-Vianney Barnier, et al. 2024. “Expression of Dystrophin Dp71 Splice Variants Is Temporally Regulated During Rodent Brain Development.” Molecular Neurobiology, May. https://doi.org/10.1007/s12035-024-04232-2.
Nisler, Jaroslav, Pavel Klimeš, Radka Končitíková, Alena Kadlecová, Jiří Voller, Mahfam Chalaki, Michael Karampelias, et al. 2024. “Cytokinin Oxidase/Dehydrogenase Inhibitors: Progress towards Agricultural Practice.” Journal of Experimental Botany, May, erae239. https://doi.org/10.1093/jxb/erae239.
Auzat, Isabelle, Malika Ouldali, Eric Jacquet, Beatrix Fauler, Thorsten Mielke, and Paulo Tavares. 2024. “Dual Function of a Highly Conserved Bacteriophage Tail Completion Protein Essential for Bacteriophage Infectivity.” Communications Biology 7 (1): 1–12. https://doi.org/10.1038/s42003-024-06221-6.
Ruedas, Rémi, Rémi Vuillemot, Thibault Tubiana, Jean-Marie Winter, Laura Pieri, Ana-Andreea Arteni, Camille Samson, Slavica Jonic, Magali Mathieu, and Stéphane Bressanelli. 2024. “Structure and Conformational Variability of the HER2-Trastuzumab-Pertuzumab Complex.” Journal of Structural Biology 216 (2): 108095. https://doi.org/10.1016/j.jsb.2024.108095.
Sheth, Sujitraj, Philipp Gotico, Christian Herrero, Annamaria Quaranta, Ally Aukauloo, and Winfried Leibl. 2024. “Proton Domino Reactions at an Imidazole Relay Control the Oxidation of a TyrZ-His190 Artificial Mimic of Photosystem II.” Chemistry (Weinheim an Der Bergstrasse, Germany), April, e202400862. https://doi.org/10.1002/chem.202400862.
Acharya, Ananya, Hélène Bret, Jen-Wei Huang, Martin Mütze, Martin Göse, Vera Maria Kissling, Ralf Seidel, Alberto Ciccia, Raphaël Guérois, and Petr Cejka. 2024. “Mechanism of DNA Unwinding by MCM8-9 in Complex with HROB.” Nature Communications 15 (1): 3584. https://doi.org/10.1038/s41467-024-47936-8.
Oumerri, Jihad, Hicham Qayouh, Ana Andreea Arteni, Jean Luc Six, Mohammed Lahcini, and Khalid Ferji. 2024. “One-Pot Formulation of Cationic Oligochitosan Coated Nanoparticles via Photo- Polymerization Induced Self-Assembly.” Chemphyschem: A European Journal of Chemical Physics and Physical Chemistry, April, e202400291. https://doi.org/10.1002/cphc.202400291.
Bischerour, Julien, Olivier Arnaiz, Coralie Zangarelli, Vinciane Régnier, Florence Iehl, Virginie Ropars, Jean-Baptiste Charbonnier, and Mireille Bétermier. 2024. “Uncoupling Programmed DNA Cleavage and Repair Scrambles the Paramecium Somatic Genome.” Cell Reports 43 (4): 114001. https://doi.org/10.1016/j.celrep.2024.114001.
Babot, Marion, Yves Boulard, Samira Agouda, Laura Pieri, Sonia Fieulaine, Stéphane Bressanelli, and Virginie Gervais. 2024. “Oligomeric Assembly of the C-Terminal and Transmembrane Region of SARS-CoV-2 Nsp3.” Journal of Virology, March, e0157523. https://doi.org/10.1128/jvi.01575-23.
Poidevin, Mickael, Nicolas Mazuras, Gwénaëlle Bontonou, Pierre Delamotte, Béatrice Denis, Maëlle Devilliers, Perla Akiki, et al. 2024. “A Fatty Acid Anabolic Pathway in Specialized-Cells Sustains a Remote Signal That Controls Egg Activation in Drosophila.” PLoS Genetics 20 (3): e1011186. https://doi.org/10.1371/journal.pgen.1011186.
Aleksandrov, Alexey, Adeline Bonvalet, Pavel Müller, Damien Sorigué, Fred Beisson, Laura Antonucci, Xavier Solinas, Manuel Joffre, and Marten Vos. 2024. “Catalytic Mechanism of Fatty Acid Photodecarboxylase: On the Detection and Stability of the Initial Carbonyloxy Radical Intermediate.” Angewandte Chemie (International Ed. in English), March, e202401376. https://doi.org/10.1002/anie.202401376.
Xue, Haoliang, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, and Daniel Gautheret. 2024. “KaMRaT: A C ++ Toolkit for k-Mer Count Matrix Dimension Reduction.” Bioinformatics (Oxford, England), March, btae090. https://doi.org/10.1093/bioinformatics/btae090.
Chades, Théo, Raphaël Le Fèvre, Imène Chebbi, Karine Blondeau, François Guyot, and Edouard Alphandéry. 2024. “Set-up of a Pharmaceutical Cell Bank of Magnetospirillum Gryphiswaldense MSR1 Magnetotactic Bacteria Producing Highly Pure Magnetosomes.” Microbial Cell Factories 23 (1): 70. https://doi.org/10.1186/s12934-024-02313-4.
Ouasti, Fouad, Maxime Audin, Karine Fréon, Jean-Pierre Quivy, Mehdi Tachekort, Elizabeth Cesard, Aurélien Thureau, et al. 2024. “Disordered Regions and Folded Modules in CAF-1 Promote Histone Deposition in Schizosaccharomyces Pombe.” ELife 12 (February): RP91461. https://doi.org/10.7554/eLife.91461.
Leuzzi, Giuseppe, Alessandro Vasciaveo, Angelo Taglialatela, Xiao Chen, Tessa M. Firestone, Allison R. Hickman, Wendy Mao, et al. 2024. “SMARCAL1 Is a Dual Regulator of Innate Immune Signaling and PD-L1 Expression That Promotes Tumor Immune Evasion.” Cell, January, S0092-8674(24)00010-2. https://doi.org/10.1016/j.cell.2024.01.008.
Gelot, Camille, Marton Tibor Kovacs, Simona Miron, Emilie Mylne, Alexis Haan, Liza Boeffard-Dosierre, Rania Ghouil, et al. 2024. “Publisher Correction: Polθ Is Phosphorylated by PLK1 to Repair Double-Strand Breaks in Mitosis.” Nature, January. https://doi.org/10.1038/s41586-024-07025-8.
Rossier, Ombeline, Cécile Labarre, Anne Lopes, Monique Auberdiac, Kevin Tambosco, Daniel Delaruelle, Hakima Abes, et al. 2024. “Genome Sequence of PSonyx, a Singleton Bacteriophage Infecting Corynebacterium Glutamicum.” Microbiology Resource Announcements, January, e0115523. https://doi.org/10.1128/mra.01155-23.
Bret, Hélène, Jinmei Gao, Diego Javier Zea, Jessica Andreani, and Raphaël Guerois. 2024. “From Interaction Networks to Interfaces, Scanning Intrinsically Disordered Regions Using AlphaFold2.” Nature Communications 15 (1): 597. https://doi.org/10.1038/s41467-023-44288-7.
Verstraeten, Sophie, Séverine Layec, Sandrine Auger, Catherine Juste, Céline Henry, Sawiya Charif, Yan Jaszczyszyn, et al. 2024. “Faecalibacterium Duncaniae A2-165 Regulates the Expression of Butyrate Synthesis, Ferrous Iron Uptake, and Stress-Response Genes Based on Acetate Consumption.” Scientific Reports 14 (1): 987. https://doi.org/10.1038/s41598-023-51059-3.
Vernhes, Emeline, Linda Larbi Chérif, Nicolas Ducrot, Clément Vanbergue, Malika Ouldali, Lena Zig, N’diaye Sidibe, et al. 2024. “Antigen Self-Anchoring onto Bacteriophage T5 Capsid-like Particles for Vaccine Design.” NPJ Vaccines 9 (1): 6. https://doi.org/10.1038/s41541-023-00798-5.
Jaffal, Hoda, Mounia Kortebi, Pauline Misson, Paulo Tavares, Malika Ouldali, Hervé Leh, Sylvie Lautru, Virginia S. Lioy, François Lecointe, and Stéphanie Bury-Moné. 2024. “Characterization of a Novel Temperate Phage Facilitating in Vitro Dispersal of Multicellular Bacteria.” bioRxiv. https://doi.org/10.1101/2023.07.22.549817.
Jouan, Romain, Gaëlle Lextrait, Joy Lachat, Aya Yokota, Raynald Cossard, Delphine Naquin, Tatiana Timchenko, Yoshitomo Kikuchi, Tsubasa Ohbayashi, and Peter Mergaert. 2024. “Transposon Sequencing Reveals the Essential Gene Set and Genes Enabling Gut Symbiosis in the Insect Symbiont Caballeronia Insecticola.” ISME Communications 4 (1): ycad001. https://doi.org/10.1093/ismeco/ycad001.
Babot, Marion, Stéphane Bressanelli, and Virginie Gervais. 2024. “[Self-assembly of the C-terminal and transmembrane region of the SARS-CoV-2 protein nsp3].” Medecine Sciences: M/S 40 (6–7): 498–500. https://doi.org/10.1051/medsci/2024067.
Lejeune, Clara, David Cornu, Laila Sago, Virginie Redeker, and Marie-Joelle Virolle. 2023. “The Stringent Response Is Strongly Activated in the Antibiotic Producing Strain, Streptomyces Coelicolor.” Research in Microbiology, December, 104177. https://doi.org/10.1016/j.resmic.2023.104177.
Houngue, Rodrigue, Lamba Omar Sangaré, Tchilabalo Dilezitoko Alayi, Aissatou Dieng, Tristan Bitard-Feildel, Claire Boulogne, Christian Slomianny, et al. 2023. “Toxoplasma Membrane Inositol Phospholipid Binding Protein TgREMIND Is Essential for Secretory Organelle Function and Host Infection.” Cell Reports 43 (1): 113601. https://doi.org/10.1016/j.celrep.2023.113601.
Alvaro-Aranda, Lucia, Ambre Petitalot, Yasmina Djeghmoum, Davide Panigada, Jenny Kaur Singh, Åsa Ehlén, Domagoj Vugic, et al. 2023. “The BRCA2 R2645G Variant Increases DNA Binding and Induces Hyper-Recombination.” Nucleic Acids Research, December, gkad1222. https://doi.org/10.1093/nar/gkad1222.
Jaudoin, Céline, Maria Maue Gehrke, Isabelle Grillo, Fabrice Cousin, Malika Ouldali, Ana-Andreea Arteni, Evelyne Ferrary, et al. 2023. “Release of Liposomes from Hyaluronic Acid-Based Hybrid Systems: Effects of Liposome Surface and Size.” International Journal of Pharmaceutics 648 (December): 123560. https://doi.org/10.1016/j.ijpharm.2023.123560.
Zecchin, Paolo, Ludovic Pecqueur, Jonathan Oltmanns, Christophe Velours, Volker Schünemann, Marc Fontecave, and Béatrice Golinelli-Pimpaneau. 2023. “Structure-Based Insights into the Mechanism of [4Fe-4S]-Dependent Sulfur Insertase LarE.” Protein Science: A Publication of the Protein Society, December, e4874. https://doi.org/10.1002/pro.4874.
Moréra, Solange, Armelle Vigouroux, Magali Aumont-Nicaise, Mohammed Ahmar, Thibault Meyer, Abbas El Sahili, Grégory Deicsics, et al. 2023. “A Highly Conserved Ligand-Binding Site for AccA Transporters of Antibiotic and Quorum-Sensing Regulator in Agrobacterium Leads to a Different Specificity.” The Biochemical Journal, December, BCJ20230273. https://doi.org/10.1042/BCJ20230273.
Amanullah, Sk, Philipp Gotico, Marie Sircoglou, Winfried Leibl, Manuel J. Llansola-Portoles, Tania Tibiletti, Annamaria Quaranta, Zakaria Halime, and Ally Aukauloo. 2023. “Second Coordination Sphere Effect Shifts CO2 to CO Reduction by Iron Porphyrin from Fe0 to FeI.” Angewandte Chemie (International Ed. in English), December, e202314439. https://doi.org/10.1002/anie.202314439.
E, Ľuptáková, Vigouroux A, Končitíková R, Kopečná M, Zalabák D, Novák O, Salcedo Sarmiento S, et al. 2023. “Plant Nucleoside N-Ribohydrolases: Riboside Binding and Role in Nitrogen Storage Mobilization.” The Plant Journal : For Cell and Molecular Biology, December. https://doi.org/10.1111/tpj.16572.
Liu, Siyu, Judith Miné-Hattab, Marie Villemeur, Raphaël Guerois, Henrik Dahl Pinholt, Leonid A. Mirny, and Angela Taddei. 2023. “Author Correction: In Vivo Tracking of Functionally Tagged Rad51 Unveils a Robust Strategy of Homology Search.” Nature Structural & Molecular Biology, November. https://doi.org/10.1038/s41594-023-01180-8.
Bazin-Gélis, Mélanie, Evangelia Eleftheriou, Coralie Zangarelli, Gaëlle Lelandais, Linda Sperling, Olivier Arnaiz, and Mireille Bétermier. 2023. “Inter-Generational Nuclear Crosstalk Links the Control of Gene Expression to Programmed Genome Rearrangement during the Paramecium Sexual Cycle.” Nucleic Acids Research, November, gkad1006. https://doi.org/10.1093/nar/gkad1006.
Ghouil, Rania, Simona Miron, Koichi Sato, Dejan Ristic, Sari E. van Rossum-Fikkert, Pierre Legrand, Malika Ouldali, et al. 2023. “BRCA2-HSF2BP Oligomeric Ring Disassembly by BRME1 Promotes Homologous Recombination.” Science Advances 9 (43): eadi7352. https://doi.org/10.1126/sciadv.adi7352.
Kefala Stavridi, Antonia, Amandine Gontier, Vincent Morin, Philippe Frit, Virginie Ropars, Nadia Barboule, Carine Racca, et al. 2023. “Structural and Functional Basis of Inositol Hexaphosphate Stimulation of NHEJ through Stabilization of Ku-XLF Interaction.” Nucleic Acids Research, October, gkad863. https://doi.org/10.1093/nar/gkad863.
Monteiro-Cardoso, Vera Filipa, Romain Le Bars, and Francesca Giordano. 2023. “Visualization and Quantification of Endogenous Intra-Organelle Protein Interactions at ER-Mitochondria Contact Sites by Proximity Ligation Assays.” Journal of Visualized Experiments: JoVE, no. 200 (October). https://doi.org/10.3791/64750.
Mao, Wei, Lars D. Renner, Charlène Cornilleau, Ines Li de la Sierra-Gallay, Sana Afensiss, Sarah Benlamara, Yoan Ah-Seng, et al. 2023. “On the Role of Nucleotides and Lipids in the Polymerization of the Actin Homolog MreB from a Gram-Positive Bacterium.” ELife 12 (October): e84505. https://doi.org/10.7554/eLife.84505.
Leccese, Silvia, Andrea Calcinoni, Adjélé Wilson, Diana Kirilovsky, Donatella Carbonera, Thomas Onfroy, Claude Jolivalt, and Alberto Mezzetti. 2023. “Orange Carotenoid Protein in Mesoporous Silica: A New System towards the Development of Colorimetric and Fluorescent Sensors for PH and Temperature.” Micromachines 14 (10): 1871. https://doi.org/10.3390/mi14101871.
Boussac, Alain, Miwa Sugiura, Makoto Nakamura, Ryo Nagao, Takumi Noguchi, Stefania Viola, A. William Rutherford, and Julien Sellés. 2023. “Absorption Changes in Photosystem II in the Soret Band Region upon the Formation of the Chlorophyll Cation Radical [PD1PD2].” Photosynthesis Research, September. https://doi.org/10.1007/s11120-023-01049-3.
Teixeira-Nunes, Magda, Pascal Retailleau, Dorothée Raoux-Barbot, Martine Comisso, Anani Amegan Missinou, Christophe Velours, Stéphane Plancqueel, Daniel Ladant, Undine Mechold, and Louis Renault. 2023. “Functional and Structural Insights into the Multi-Step Activation and Catalytic Mechanism of Bacterial ExoY Nucleotidyl Cyclase Toxins Bound to Actin-Profilin.” PLoS Pathogens 19 (9): e1011654. https://doi.org/10.1371/journal.ppat.1011654.
Moreira Da Silva, Cora, Maxime Vallet, Clément Semion, Thomas Blin, Romuald Saint-Martin, Jocelyne Leroy, Diana Dragoé, et al. 2023. “A Simple and Efficient Process for the Synthesis of 2D Carbon Nitrides and Related Materials.” Scientific Reports 13 (1): 15423. https://doi.org/10.1038/s41598-023-39899-5.
Gelot, Camille, Marton Tibor Kovacs, Simona Miron, Emilie Mylne, Alexis Haan, Liza Boeffard-Dosierre, Rania Ghouil, et al. 2023. “Polθ Is Phosphorylated by PLK1 to Repair Double-Strand Breaks in Mitosis.” Nature, September. https://doi.org/10.1038/s41586-023-06506-6.
Miller, Jessalyn, Agathe Urvoas, Benoit Gigant, Malika Ouldali, Ana Arteni, Agnes Mesneau, Marie Valerio-Lepiniec, Franck Artzner, Erik Dujardin, and Philippe Minard. 2023. “Engineering of Brick and Staple Components for Ordered Assembly of Synthetic Repeat Proteins.” Journal of Structural Biology 215 (3): 108012. https://doi.org/10.1016/j.jsb.2023.108012.
Hussain, Saadat, Mujeeb Ur Rehman, Aqsa Arif, Catherine Cailleau, Cynthia Gillet, Rudaba Saleem, Hira Noor, et al. 2023. “Diclofenac Prodrugs Nanoparticles: An Alternative and Efficient Treatment for Rheumatoid Arthritis?” International Journal of Pharmaceutics, July, 123227. https://doi.org/10.1016/j.ijpharm.2023.123227.
Renouard, Emilie, Magdalena Nowinska, Fabien Lacombat, Pascal Plaza, Pavel Müller, and Agathe Espagne. 2023. “Multiscale Transient Absorption Study of the Fluorescent Protein Dreiklang and Two Point Variants Provides Insight into Photoswitching and Nonproductive Reaction Pathways.” The Journal of Physical Chemistry Letters, July, 6477–85. https://doi.org/10.1021/acs.jpclett.3c00431.
Veremeienko, Vasyl, Chloe Magne, Minh-Huong Ha-Thi, Ana Arteni, Andrew Pascal, Mikas Vengris, Thomas Pino, Robert Bruno, and Manuel Llansola-Portoles. 2023. “Singlet Fission in Heterogeneous Lycopene Aggregates.” ChemRxiv. https://doi.org/10.26434/chemrxiv-2023-t3q2s.
Horváth, Beatrix, Berivan Güngör, Mónika Tóth, Ágota Domonkos, Ferhan Ayaydin, Farheen Saifi, Yuhui Chen, et al. 2023. “The Medicago Truncatula Nodule-Specific Cysteine-Rich Peptides, NCR343 and NCR-New35 Are Required for the Maintenance of Rhizobia in Nitrogen-Fixing Nodules.” The New Phytologist, June. https://doi.org/10.1111/nph.19097.
Bonaud, Amélie, Pierre Larraufie, Mélanie Khamyath, Ugo Szachnowski, Shaun M. Flint, Nadège Brunel-Meunier, François Delhommeau, et al. 2023. “Transinteractome Analysis Reveals Distinct Niche Requirements for Isotype-Based Plasma Cell Subsets in the Bone Marrow.” European Journal of Immunology, June, e2250334. https://doi.org/10.1002/eji.202250334.
Schweke, Hugo, Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals, Alix Lhéritier, et al. 2023. “Discriminating Physiological from Non-Physiological Interfaces in Structures of Protein Complexes: A Community-Wide Study.” Proteomics, June, e2200323. https://doi.org/10.1002/pmic.202200323.
Pourcel, Christine, Malika Ouldali, Paulo Tavares, and Christiane Essoh. 2023. “The Saclayvirus Aci01-1 Very Long and Complex Fiber and Its Receptor at the Acinetobacter Baumannii Surface.” Archives of Virology 168 (7): 187. https://doi.org/10.1007/s00705-023-05817-3.
Wang, Yanan, Giovanni Chiappetta, Raphaël Guérois, Yijun Liu, Stéphane Romero, Daniel J. Boesch, Matthias Krause, et al. 2023. “PPP2R1A Regulates Migration Persistence through the NHSL1-Containing WAVE Shell Complex.” Nature Communications 14 (1): 3541. https://doi.org/10.1038/s41467-023-39276-w.
Seif-El-Dahan, Murielle, Antonia Kefala-Stavridi, Philippe Frit, Steven W. Hardwick, Dima Y. Chirgadze, Taiana Maia De Oliviera, Sébastien Britton, et al. 2023. “PAXX Binding to the NHEJ Machinery Explains Functional Redundancy with XLF.” Science Advances 9 (22): eadg2834. https://doi.org/10.1126/sciadv.adg2834.
Hardwick, Steven W., Antonia Kefala Stavridi, Dimitri Y. Chirgadze, Taiana Maia De Oliveira, Jean-Baptiste Charbonnier, Virginie Ropars, Katheryn Meek, Tom L. Blundell, and Amanda K. Chaplin. 2023. “Cryo-EM Structure of a DNA-PK Trimer: Higher Order Oligomerisation in NHEJ.” Structure (London, England: 1993), May, S0969-2126(23)00167-3. https://doi.org/10.1016/j.str.2023.05.013.
Dijk, Erwin L. van, Delphine Naquin, Kévin Gorrichon, Yan Jaszczyszyn, Rania Ouazahrou, Claude Thermes, and Céline Hernandez. 2023. “Genomics in the Long-Read Sequencing Era.” Trends in Genetics: TIG, May, S0168-9525(23)00119-1. https://doi.org/10.1016/j.tig.2023.04.006.
Brison, Olivier, Stefano Gnan, Dana Azar, Stéphane Koundrioukoff, Rodrigo Melendez-Garcia, Su-Jung Kim, Mélanie Schmidt, et al. 2023. “Mistimed Origin Licensing and Activation Stabilize Common Fragile Sites under Tight DNA-Replication Checkpoint Activation.” Nature Structural & Molecular Biology, April. https://doi.org/10.1038/s41594-023-00949-1.
Tabares, Leandro C., Davis T. Daniel, José Luis Vázquez-Ibar, Cyrille Kouklovsky, Valérie Alezra, and Sun Un. 2023. “Using the Noncanonical Metallo-Amino Acid [Cu(II)(2,2’-Bipyridin-5-Yl)]-Alanine to Study the Structures of Proteins.” The Journal of Physical Chemistry Letters, March, 3368–75. https://doi.org/10.1021/acs.jpclett.3c00196.
Moreaud, Laureen, Sébastien Viollet, Agathe Urvoas, Marie Valerio-Lepiniec, Agnès Mesneau, Inès Li de la Sierra-Gallay, Jessalyn Miller, et al. 2023. “Design, Synthesis, and Characterization of Protein Origami Based on Self-Assembly of a Brick and Staple Artificial Protein Pair.” Proceedings of the National Academy of Sciences of the United States of America 120 (11): e2218428120. https://doi.org/10.1073/pnas.2218428120.
Mezzetti, Alberto, Jean-François Paul, and Winfried Leibl. 2023. “Identification of a Ubiquinone-Ubiquinol Quinhydrone Complex in Bacterial Photosynthetic Membranes and Isolated Reaction Centers by Time-Resolved Infrared Spectroscopy.” International Journal of Molecular Sciences 24 (6): 5233. https://doi.org/10.3390/ijms24065233.
Audoynaud, Charlotte, Kamila Schirmeisen, Anissia Ait Saada, Armelle Gesnik, Paloma Fernández-Varela, Virginie Boucherit, Virginie Ropars, et al. 2023. “RNA:DNA Hybrids from Okazaki Fragments Contribute to Establish the Ku-Mediated Barrier to Replication-Fork Degradation.” Molecular Cell, February, S1097-2765(23)00106-5. https://doi.org/10.1016/j.molcel.2023.02.008.
Travin, Dmitrii Y., Romain Jouan, Armelle Vigouroux, Satomi Inaba-Inoue, Joy Lachat, Fazal Haq, Tatiana Timchenko, et al. 2023. “Dual-Uptake Mode of the Antibiotic Phazolicin Prevents Resistance Acquisition by Gram-Negative Bacteria.” MBio, February, e0021723. https://doi.org/10.1128/mbio.00217-23.
Bělíček, Jakub, Eva Ľuptáková, David Kopečný, Jan Frömmel, Armelle Vigouroux, Sanja Ćavar Zeljković, Franjo Jagic, et al. 2023. “Biochemical Ans Structural Basis of Polyamine, Lysine and Ornithine Acetylation Catalyzed by Spermine/Spermidine N-Acetyl Transferase in Moss and Maize.” The Plant Journal: For Cell and Molecular Biology, February. https://doi.org/10.1111/tpj.16148.
Charvin, Magali, Thierry Halter, Romain Blanc-Mathieu, Pierre Barraud, Magali Aumont-Nicaise, François Parcy, and Lionel Navarro. 2023. “Single-Cytosine Methylation at W-Boxes Repels Binding of WRKY Transcription Factors through Steric Hindrance.” Plant Physiology, February, kiad069. https://doi.org/10.1093/plphys/kiad069.
Ceppi, Ilaria, Elda Cannavo, Hélène Bret, Rosa Camarillo, Francesca Vivalda, Roshan Singh Thakur, Amador Romero-Franco, et al. 2023. “PLK1 Regulates CtIP and DNA2 Interplay in Long-Range DNA End Resection.” Genes & Development, February. https://doi.org/10.1101/gad.349981.122.
Messant, Marine, Umama Hani, Thaïs Hennebelle, Florence Guérard, Bertrand Gakière, Andrew Gall, Sébastien Thomine, and Anja Krieger-Liszkay. 2023. “Manganese Concentration Affects Chloroplast Structure and the Photosynthetic Apparatus in Marchantia Polymorpha.” Plant Physiology, February, kiad052. https://doi.org/10.1093/plphys/kiad052.
Cargemel, Claire, Stéphanie Marsin, Magali Noiray, Pierre Legrand, Halil Bounoua, Inès Li de la Sierra-Gallay, Hélène Walbott, and Sophie Quevillon-Cheruel. 2023. “The LH-DH Module of Bacterial Replicative Helicases Is the Common Binding Site for DciA and Other Helicase Loaders.” Acta Crystallographica. Section D, Structural Biology 79 (Pt 2): 177–87. https://doi.org/10.1107/S2059798323000281.
Daugeron, Marie-Claire, Sophia Missoury, Violette Da Cunha, Noureddine Lazar, Bruno Collinet, Herman van Tilbeurgh, and Tamara Basta. 2023. “A Paralog of Pcc1 Is the Fifth Core Subunit of the KEOPS TRNA-Modifying Complex in Archaea.” Nature Communications 14 (1): 526. https://doi.org/10.1038/s41467-023-36210-y.
Oliveira, Leonor, Nicolas Chevrollier, Jean-Felix Dallery, Richard J. O’Connell, Marc-Henri Lebrun, Muriel Viaud, and Olivier Lespinet. 2023. “CusProSe: A Customizable Protein Annotation Software with an Application to the Prediction of Fungal Secondary Metabolism Genes.” Scientific Reports 13 (1): 1417. https://doi.org/10.1038/s41598-023-27813-y.
Gomes, M., A. Fleck, A. Degaugue, F. Gourmelon, C. Léger, M. Aumont-Nicaise, A. Mesneau, et al. 2023. “Design of an Artificial Phage-Display Library Based on a New Scaffold Improved for Average Stability of the Randomized Proteins.” Scientific Reports 13 (1): 1339. https://doi.org/10.1038/s41598-023-27710-4.
Singh, Dipesh Kumar, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene, Geert De Jaeger, Imran Siddiqi, Raphael Guerois, Wayne Crismani, and Raphael Mercier. 2023. “The FANCC-FANCE-FANCF Complex Is Evolutionarily Conserved and Regulates Meiotic Recombination.” Nucleic Acids Research, January, gkac1244. https://doi.org/10.1093/nar/gkac1244.
Wu, Xia, Yaqun Liu, Yves d’Aubenton-Carafa, Claude Thermes, Olivier Hyrien, Chun-Long Chen, and Nataliya Petryk. 2023. “Genome-Wide Measurement of DNA Replication Fork Directionality and Quantification of DNA Replication Initiation and Termination with Okazaki Fragment Sequencing.” Nature Protocols, January. https://doi.org/10.1038/s41596-022-00793-5.
Cargemel, Claire, Sonia Baconnais, Magali Aumont-Nicaise, Magali Noiray, Lia Maurin, Jessica Andreani, Hélène Walbott, et al. 2023. “Structural Insights of the DciA Helicase Loader in Its Relationship with DNA.” International Journal of Molecular Sciences 24 (2): 1427. https://doi.org/10.3390/ijms24021427.
Dieudonné, Thibaud, Christine Jaxel, Maylis Lejeune, Guillaume Lenoir, and Cédric Montigny. 2023. “Expression in Saccharomyces Cerevisiae and Purification of a Human Phospholipid Flippase.” Methods in Molecular Biology (Clifton, N.J.) 2652: 231–46. https://doi.org/10.1007/978-1-0716-3147-8_13.
Honfozo, Ariane, Rania Ghouil, Tchilabalo Dilezitoko Alayi, Malika Ouldali, Ana-Andreea Arteni, Cynthia Menonve Atindehou, Lucie Ayi Fanou, Yetrib Hathout, Sophie Zinn-Justin, and Stanislas Tomavo. 2023. “The Luminal Domain of Toxoplasma Gondii Sortilin Adopts a Ring-Shaped Structure Exhibiting Motifs Specific to Apicomplexan Parasites.” Frontiers in Parasitology 2. https://www.frontiersin.org/articles/10.3389/fpara.2023.1103772.
He, Nisha, Jingjing Zhou, Ornella Bimai, Jonathan Oltmanns, Jean-Luc Ravanat, Christophe Velours, Volker Schünemann, Marc Fontecave, and Béatrice Golinelli-Pimpaneau. 2022. “A Subclass of Archaeal U8-TRNA Sulfurases Requires a [4Fe–4S] Cluster for Catalysis.” Nucleic Acids Research, December, gkac1156. https://doi.org/10.1093/nar/gkac1156.
Torres, Marta, Almudena Gonzalez-Mula, Delphine Naquin, and Denis Faure. 2022. “Construction of a Transposon Mutant Library in the Pathogen Agrobacterium Tumefaciens C58 and Identification of Genes Involved in Gall Niche Exploitation and Colonization.” In Microbial Environmental Genomics (MEG), edited by Francis Martin and Stephane Uroz, 209–26. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2871-3_11.
Jaudoin, Céline, Isabelle Grillo, Fabrice Cousin, Maria Gehrke, Malika Ouldali, Ana-Andreea Arteni, Luc Picton, et al. 2022. “Hybrid Systems Combining Liposomes and Entangled Hyaluronic Acid Chains: Influence of Liposome Surface and Drug Encapsulation on the Microstructure.” Journal of Colloid and Interface Science 628 (December): 995–1007. https://doi.org/10.1016/j.jcis.2022.07.146.
Nevers, Quentin, Nathalie Scrima, Damien Glon, Romain Le Bars, Alice Decombe, Nathalie Garnier, Malika Ouldali, et al. 2022. “Properties of Rabies Virus Phosphoprotein and Nucleoprotein Biocondensates Formed in Vitro and in Cellulo.” PLOS Pathogens 18 (12): e1011022. https://doi.org/10.1371/journal.ppat.1011022.
Carceller-Zazo, Elena, Lisa M. Sevilla, Omar Pons-Alonso, Álvaro Chiner-Oms, Larbi Amazit, Thi An Vu, Géraldine Vitellius, et al. 2022. “The Mineralocorticoid Receptor Modulates Timing and Location of Genomic Binding by Glucocorticoid Receptor in Response to Synthetic Glucocorticoids in Keratinocytes.” The FASEB Journal 37 (1): e22709. https://doi.org/10.1096/fj.202201199RR.
Marion-Poll, Lucile, Jean-Pierre Roussarie, Lieng Taing, Cloelia Dard-Dascot, Nicolas Servant, Yan Jaszczyszyn, Emmanuelle Jordi, et al. 2022. “DNA Methylation and Hydroxymethylation Characterize the Identity of D1 and D2 Striatal Projection Neurons.” Communications Biology 5 (1): 1–16. https://doi.org/10.1038/s42003-022-04269-w.
Via y Rada, Romina, Nathalie Daniel, Catherine Archilla, Anne Frambourg, Luc Jouneau, Yan Jaszczyszyn, Gilles Charpigny, Véronique Duranthon, and Sophie Calderari. 2022. “Identification of the Inner Cell Mass and the Trophectoderm Responses after an In Vitro Exposure to Glucose and Insulin during the Preimplantation Period in the Rabbit Embryo.” Cells 11 (23): 3766. https://doi.org/10.3390/cells11233766.
Zangarelli, Coralie, Olivier Arnaiz, Mickael Bourge, Kevin Gorrichon, Yan Jaszczyszyn, Nathalie Mathy, Loic Escoriza, Mireille Betermier, and Vinciane Regnier. 2022. “Developmental Timing of Programmed DNA Elimination in Paramecium Tetraurelia Recapitulates Germline Transposon Evolutionary Dynamics.” Genome Research, November, gr.277027.122. https://doi.org/10.1101/gr.277027.122.
Hernandez, Céline, Gabriele Cancila, Olivier Ayrault, Andrei Zinovyev, and Loredana Martignetti. 2022. “ClustMMRA v2: A Scalable Computational Pipeline for the Identification of MicroRNA Clusters Acting Cooperatively on Tumor Molecular Subgroups.” In Systems Biology of MicroRNAs in Cancer, edited by Ulf Schmitz, Olaf Wolkenhauer, and Julio Vera-González, 259–79. Advances in Experimental Medicine and Biology. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-031-08356-3_10.
Rietmeyer, Lauriane, Inès Li De La Sierra-Gallay, Guy Schepers, Delphine Dorchêne, Laura Iannazzo, Delphine Patin, Thierry Touzé, et al. 2022. “Amino-Acyl TXNA as Inhibitors or Amino Acid Donors in Peptide Synthesis.” Nucleic Acids Research, November, gkac1023. https://doi.org/10.1093/nar/gkac1023.
Bousset, Luc, Ania Alik, Ana Arteni, Anja Böckmann, Beat H. Meier, and Ronald Melki. 2022. “α-Synuclein Fibril, Ribbon and Fibril-91 Amyloid Polymorphs Generation for Structural Studies.” In Protein Aggregation: Methods and Protocols, edited by Andrzej Stanisław Cieplak, 345–55. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2597-2_23.
Monteiro-Cardoso, Vera F., Leila Rochin, Amita Arora, Audrey Houcine, Eeva Jääskeläinen, Annukka M. Kivelä, Cécile Sauvanet, et al. 2022. “ORP5/8 and MIB/MICOS Link ER-Mitochondria and Intra-Mitochondrial Contacts for Non-Vesicular Transport of Phosphatidylserine.” Cell Reports 40 (12). https://doi.org/10.1016/j.celrep.2022.111364.
Borgne, Pierrick Le, Logan Greibill, Marine Hélène Laporte, Michel Lemullois, Khaled Bouhouche, Mebarek Temagoult, Olivier Rosnet, et al. 2022. “The Evolutionary Conserved Proteins CEP90, FOPNL, and OFD1 Recruit Centriolar Distal Appendage Proteins to Initiate Their Assembly.” PLOS Biology 20 (9): e3001782. https://doi.org/10.1371/journal.pbio.3001782.
Thébault, Stéphanie, Nathalie Lejal, Alexis Dogliani, Amélie Donchet, Agathe Urvoas, Marie Valerio-Lepiniec, Muriel Lavie, et al. 2022. “Biosynthetic Proteins Targeting the SARS-CoV-2 Spike as Anti-Virals.” PLOS Pathogens 18 (9): e1010799. https://doi.org/10.1371/journal.ppat.1010799.
Bouchereau, Wilhelm, Luc Jouneau, Catherine Archilla, Irène Aksoy, Anais Moulin, Nathalie Daniel, Nathalie Peynot, et al. 2022. “Major Transcriptomic, Epigenetic and Metabolic Changes Underly the Pluripotency Continuum in Rabbit Preimplantation Embryos.” Development, August, dev.200538. https://doi.org/10.1242/dev.200538.
Lazar, Noureddine, Carl H. Mesarich, Yohann Petit-Houdenot, Nacera Talbi, Ines Li de la Sierra-Gallay, Emilie Zélie, Karine Blondeau, et al. 2022. “A New Family of Structurally Conserved Fungal Effectors Displays Epistatic Interactions with Plant Resistance Proteins.” PLOS Pathogens 18 (7): e1010664. https://doi.org/10.1371/journal.ppat.1010664.
Banerjee, Payel, Paul Joly, Luc Jouneau, Yan Jaszczyszyn, Mickaël Bourge, Pierre Affaticati, Jean-Pierre Levraud, Pierre Boudinot, and Jean-Stéphane Joly. 2022. “Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury.” Cells 11 (13): 2016. https://doi.org/10.3390/cells11132016.
Derisoud, Emilie, Luc Jouneau, Cédric Dubois, Catherine Archilla, Yan Jaszczyszyn, Rachel Legendre, Nathalie Daniel, et al. 2022. “Maternal Age Affects Equine Day 8 Embryo Gene Expression Both in Trophoblast and Inner Cell Mass.” BMC Genomics 23 (1): 443. https://doi.org/10.1186/s12864-022-08593-7.
Minić, Simeon, Burkhard Annighöfer, Arnaud Hélary, Laïla Sago, David Cornu, Annie Brûlet, and Sophie Combet. 2022. “Structure of Proteins under Pressure: Covalent Binding Effects of Biliverdin on β-Lactoglobulin.” Biophysical Journal 0 (0). https://doi.org/10.1016/j.bpj.2022.06.003.
Cargemel, Claire, Hélène Walbott, Dominique Durand, Pierre Legrand, Malika Ouldali, Jean-Luc Ferat, Stéphanie Marsin, and Sophie Quevillon-Cheruel. 2022. “The Apo-Form of the Vibrio Cholerae Replicative Helicase DnaB Is a Labile and Inactive Planar Trimer of Dimers.” FEBS Letters n/a (n/a). https://doi.org/10.1002/1873-3468.14403.
Soisig Steunou, Anne, Armelle Vigouroux, Magali Aumont-Nicaise, Stéphane Plancqueel, Alain Boussac, Soufian Ouchane, and Solange Moréra. 2022. “New Insights into the Mechanism of Iron Transport through the Bacterial Ftr-System Present in Pathogens.” The FEBS Journal n/a (n/a). https://doi.org/10.1111/febs.16476.
Campanacci, Valérie, Agathe Urvoas, Liza Ammar Khodja, Magali Aumont-Nicaise, Magali Noiray, Sylvie Lachkar, Patrick A. Curmi, Philippe Minard, and Benoît Gigant. 2022. “Structural Convergence for Tubulin Binding of CPAP and Vinca Domain Microtubule Inhibitors.” Proceedings of the National Academy of Sciences 119 (19): e2120098119. https://doi.org/10.1073/pnas.2120098119.
Piet, Quentin, Gaetan Droc, William Marande, Gautier Sarah, Stéphanie Bocs, Christophe Klopp, Mickael Bourge, et al. 2022. “A Chromosome-Level, Haplotype-Phased Vanilla Planifolia Genome Highlights the Challenge of Partial Endoreplication for Accurate Whole-Genome Assembly.” Plant Communications, May, 100330. https://doi.org/10.1016/j.xplc.2022.100330.
Kissling, Vera M., Giordano Reginato, Eliana Bianco, Kristina Kasaciunaite, Janny Tilma, Gea Cereghetti, Natalie Schindler, et al. 2022. “Mre11-Rad50 Oligomerization Promotes DNA Double-Strand Break Repair.” Nature Communications 13 (1): 2374. https://doi.org/10.1038/s41467-022-29841-0.
Damke, Prashant P., Louisa Celma, Sumedha M. Kondekar, Anne Marie Di Guilmi, Stéphanie Marsin, Jordane Dépagne, Xavier Veaute, et al. 2022. “ComFC Mediates Transport and Handling of Single-Stranded DNA during Natural Transformation.” Nature Communications 13 (1): 1961. https://doi.org/10.1038/s41467-022-29494-z.
Lejeune, Clara, Laila Sago, David Cornu, Virginie Redeker, and Marie-Joelle Virolle. 2022. “A Proteomic Analysis Indicates That Oxidative Stress Is the Common Feature Triggering Antibiotic Production in Streptomyces Coelicolor and in the PptA Mutant of Streptomyces Lividans.” Frontiers in Microbiology 12 (March). https://www.frontiersin.org/article/10.3389/fmicb.2021.813993.
Guercio, Angelica M., Salar Torabi, David Cornu, Marion Dalmais, Abdelhafid Bendahmane, Christine Le Signor, Jean-Paul Pillot, et al. 2022. “Structural and Functional Analyses Explain Pea KAI2 Receptor Diversity and Reveal Stereoselective Catalysis during Signal Perception.” Communications Biology 5 (1): 1–16. https://doi.org/10.1038/s42003-022-03085-6.
Velours, Christophe, Jingjing Zhou, Paolo Zecchin, Nisha He, Myriam Salameh, Marie-Pierre Golinelli-Cohen, and Béatrice Golinelli-Pimpaneau. 2022. “Determination of the Absolute Molar Mass of [Fe-S]-Containing Proteins Using Size Exclusion Chromatography-Multi-Angle Light Scattering (SEC-MALS).” Biomolecules 12 (2): 270. https://doi.org/10.3390/biom12020270.
Adam, Yazid, Pierre Brezellec, Elena Espinosa, Amelie Besombes, Delphine Naquin, Evelyne Paly, Christophe Possoz, Erwin van Dijk, Barre Francois-Xavier, and Ferat Jean-Luc. 2022. “Plesiomonas Shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.” Genome Biology and Evolution, January, evac011. https://doi.org/10.1093/gbe/evac011.
Scroll to Top