Publications in 2021
Cargemel, Claire, Sonia Baconnais, Magali Aumont-Nicaise, Magali Noiray, Lia Maurin, Jessica Andreani, Hélène Walbott, et al. 2023. “Structural Insights of the DciA Helicase Loader in Its Relationship with DNA.” International Journal of Molecular Sciences 24 (2): 1427. https://doi.org/10.3390/ijms24021427.
Singh, Dipesh Kumar, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene, Geert De Jaeger, Imran Siddiqi, Raphael Guerois, Wayne Crismani, and Raphael Mercier. 2023. “The FANCC-FANCE-FANCF Complex Is Evolutionarily Conserved and Regulates Meiotic Recombination.” Nucleic Acids Research, January, gkac1244. https://doi.org/10.1093/nar/gkac1244.
Wu, Xia, Yaqun Liu, Yves d’Aubenton-Carafa, Claude Thermes, Olivier Hyrien, Chun-Long Chen, and Nataliya Petryk. 2023. “Genome-Wide Measurement of DNA Replication Fork Directionality and Quantification of DNA Replication Initiation and Termination with Okazaki Fragment Sequencing.” Nature Protocols, January. https://doi.org/10.1038/s41596-022-00793-5.
Gomes, M., A. Fleck, A. Degaugue, F. Gourmelon, C. Léger, M. Aumont-Nicaise, A. Mesneau, et al. 2023. “Design of an Artificial Phage-Display Library Based on a New Scaffold Improved for Average Stability of the Randomized Proteins.” Scientific Reports 13 (1): 1339. https://doi.org/10.1038/s41598-023-27710-4.
Oliveira, Leonor, Nicolas Chevrollier, Jean-Felix Dallery, Richard J. O’Connell, Marc-Henri Lebrun, Muriel Viaud, and Olivier Lespinet. 2023. “CusProSe: A Customizable Protein Annotation Software with an Application to the Prediction of Fungal Secondary Metabolism Genes.” Scientific Reports 13 (1): 1417. https://doi.org/10.1038/s41598-023-27813-y.
Daugeron, Marie-Claire, Sophia Missoury, Violette Da Cunha, Noureddine Lazar, Bruno Collinet, Herman van Tilbeurgh, and Tamara Basta. 2023. “A Paralog of Pcc1 Is the Fifth Core Subunit of the KEOPS TRNA-Modifying Complex in Archaea.” Nature Communications 14 (1): 526. https://doi.org/10.1038/s41467-023-36210-y.
Messant, Marine, Umama Hani, Thaïs Hennebelle, Florence Guérard, Bertrand Gakière, Andrew Gall, Sébastien Thomine, and Anja Krieger-Liszkay. 2023. “Manganese Concentration Affects Chloroplast Structure and the Photosynthetic Apparatus in Marchantia Polymorpha.” Plant Physiology, February, kiad052. https://doi.org/10.1093/plphys/kiad052.
Adam, Yazid, Pierre Brezellec, Elena Espinosa, Amelie Besombes, Delphine Naquin, Evelyne Paly, Christophe Possoz, Erwin van Dijk, Barre Francois-Xavier, and Ferat Jean-Luc. 2022. “Plesiomonas Shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.” Genome Biology and Evolution, January, evac011. https://doi.org/10.1093/gbe/evac011.
Velours, Christophe, Jingjing Zhou, Paolo Zecchin, Nisha He, Myriam Salameh, Marie-Pierre Golinelli-Cohen, and Béatrice Golinelli-Pimpaneau. 2022. “Determination of the Absolute Molar Mass of [Fe-S]-Containing Proteins Using Size Exclusion Chromatography-Multi-Angle Light Scattering (SEC-MALS).” Biomolecules 12 (2): 270. https://doi.org/10.3390/biom12020270.
Guercio, Angelica M., Salar Torabi, David Cornu, Marion Dalmais, Abdelhafid Bendahmane, Christine Le Signor, Jean-Paul Pillot, et al. 2022. “Structural and Functional Analyses Explain Pea KAI2 Receptor Diversity and Reveal Stereoselective Catalysis during Signal Perception.” Communications Biology 5 (1): 1–16. https://doi.org/10.1038/s42003-022-03085-6.
Lejeune, Clara, Laila Sago, David Cornu, Virginie Redeker, and Marie-Joelle Virolle. 2022. “A Proteomic Analysis Indicates That Oxidative Stress Is the Common Feature Triggering Antibiotic Production in Streptomyces Coelicolor and in the PptA Mutant of Streptomyces Lividans.” Frontiers in Microbiology 12 (March). https://www.frontiersin.org/article/10.3389/fmicb.2021.813993.
Damke, Prashant P., Louisa Celma, Sumedha M. Kondekar, Anne Marie Di Guilmi, Stéphanie Marsin, Jordane Dépagne, Xavier Veaute, et al. 2022. “ComFC Mediates Transport and Handling of Single-Stranded DNA during Natural Transformation.” Nature Communications 13 (1): 1961. https://doi.org/10.1038/s41467-022-29494-z.
Kissling, Vera M., Giordano Reginato, Eliana Bianco, Kristina Kasaciunaite, Janny Tilma, Gea Cereghetti, Natalie Schindler, et al. 2022. “Mre11-Rad50 Oligomerization Promotes DNA Double-Strand Break Repair.” Nature Communications 13 (1): 2374. https://doi.org/10.1038/s41467-022-29841-0.
Piet, Quentin, Gaetan Droc, William Marande, Gautier Sarah, Stéphanie Bocs, Christophe Klopp, Mickael Bourge, et al. 2022. “A Chromosome-Level, Haplotype-Phased Vanilla Planifolia Genome Highlights the Challenge of Partial Endoreplication for Accurate Whole-Genome Assembly.” Plant Communications, May, 100330. https://doi.org/10.1016/j.xplc.2022.100330.
Campanacci, Valérie, Agathe Urvoas, Liza Ammar Khodja, Magali Aumont-Nicaise, Magali Noiray, Sylvie Lachkar, Patrick A. Curmi, Philippe Minard, and Benoît Gigant. 2022. “Structural Convergence for Tubulin Binding of CPAP and Vinca Domain Microtubule Inhibitors.” Proceedings of the National Academy of Sciences 119 (19): e2120098119. https://doi.org/10.1073/pnas.2120098119.
Soisig Steunou, Anne, Armelle Vigouroux, Magali Aumont-Nicaise, Stéphane Plancqueel, Alain Boussac, Soufian Ouchane, and Solange Moréra. 2022. “New Insights into the Mechanism of Iron Transport through the Bacterial Ftr-System Present in Pathogens.” The FEBS Journal n/a (n/a). https://doi.org/10.1111/febs.16476.
Cargemel, Claire, Hélène Walbott, Dominique Durand, Pierre Legrand, Malika Ouldali, Jean-Luc Ferat, Stéphanie Marsin, and Sophie Quevillon-Cheruel. 2022. “The Apo-Form of the Vibrio Cholerae Replicative Helicase DnaB Is a Labile and Inactive Planar Trimer of Dimers.” FEBS Letters n/a (n/a). https://doi.org/10.1002/1873-3468.14403.
Minić, Simeon, Burkhard Annighöfer, Arnaud Hélary, Laïla Sago, David Cornu, Annie Brûlet, and Sophie Combet. 2022. “Structure of Proteins under Pressure: Covalent Binding Effects of Biliverdin on β-Lactoglobulin.” Biophysical Journal 0 (0). https://doi.org/10.1016/j.bpj.2022.06.003.
Derisoud, Emilie, Luc Jouneau, Cédric Dubois, Catherine Archilla, Yan Jaszczyszyn, Rachel Legendre, Nathalie Daniel, et al. 2022. “Maternal Age Affects Equine Day 8 Embryo Gene Expression Both in Trophoblast and Inner Cell Mass.” BMC Genomics 23 (1): 443. https://doi.org/10.1186/s12864-022-08593-7.
Banerjee, Payel, Paul Joly, Luc Jouneau, Yan Jaszczyszyn, Mickaël Bourge, Pierre Affaticati, Jean-Pierre Levraud, Pierre Boudinot, and Jean-Stéphane Joly. 2022. “Molecular and Cellular Analysis of the Repair of Zebrafish Optic Tectum Meninges Following Laser Injury.” Cells 11 (13): 2016. https://doi.org/10.3390/cells11132016.
Bouchereau, Wilhelm, Luc Jouneau, Catherine Archilla, Irène Aksoy, Anais Moulin, Nathalie Daniel, Nathalie Peynot, et al. 2022. “Major Transcriptomic, Epigenetic and Metabolic Changes Underly the Pluripotency Continuum in Rabbit Preimplantation Embryos.” Development, August, dev.200538. https://doi.org/10.1242/dev.200538.
Thébault, Stéphanie, Nathalie Lejal, Alexis Dogliani, Amélie Donchet, Agathe Urvoas, Marie Valerio-Lepiniec, Muriel Lavie, et al. 2022. “Biosynthetic Proteins Targeting the SARS-CoV-2 Spike as Anti-Virals.” PLOS Pathogens 18 (9): e1010799. https://doi.org/10.1371/journal.ppat.1010799.
Monteiro-Cardoso, Vera F., Leila Rochin, Amita Arora, Audrey Houcine, Eeva Jääskeläinen, Annukka M. Kivelä, Cécile Sauvanet, et al. 2022. “ORP5/8 and MIB/MICOS Link ER-Mitochondria and Intra-Mitochondrial Contacts for Non-Vesicular Transport of Phosphatidylserine.” Cell Reports 40 (12). https://doi.org/10.1016/j.celrep.2022.111364.
Bousset, Luc, Ania Alik, Ana Arteni, Anja Böckmann, Beat H. Meier, and Ronald Melki. 2022. “α-Synuclein Fibril, Ribbon and Fibril-91 Amyloid Polymorphs Generation for Structural Studies.” In Protein Aggregation: Methods and Protocols, edited by Andrzej Stanisław Cieplak, 345–55. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2597-2_23.
Hernandez, Céline, Gabriele Cancila, Olivier Ayrault, Andrei Zinovyev, and Loredana Martignetti. 2022. “ClustMMRA v2: A Scalable Computational Pipeline for the Identification of MicroRNA Clusters Acting Cooperatively on Tumor Molecular Subgroups.” In Systems Biology of MicroRNAs in Cancer, edited by Ulf Schmitz, Olaf Wolkenhauer, and Julio Vera-González, 259–79. Advances in Experimental Medicine and Biology. Cham: Springer International Publishing. https://doi.org/10.1007/978-3-031-08356-3_10.
Zangarelli, Coralie, Olivier Arnaiz, Mickael Bourge, Kevin Gorrichon, Yan Jaszczyszyn, Nathalie Mathy, Loic Escoriza, Mireille Betermier, and Vinciane Regnier. 2022. “Developmental Timing of Programmed DNA Elimination in Paramecium Tetraurelia Recapitulates Germline Transposon Evolutionary Dynamics.” Genome Research, November, gr.277027.122. https://doi.org/10.1101/gr.277027.122.
Via y Rada, Romina, Nathalie Daniel, Catherine Archilla, Anne Frambourg, Luc Jouneau, Yan Jaszczyszyn, Gilles Charpigny, Véronique Duranthon, and Sophie Calderari. 2022. “Identification of the Inner Cell Mass and the Trophectoderm Responses after an In Vitro Exposure to Glucose and Insulin during the Preimplantation Period in the Rabbit Embryo.” Cells 11 (23): 3766. https://doi.org/10.3390/cells11233766.
Marion-Poll, Lucile, Jean-Pierre Roussarie, Lieng Taing, Cloelia Dard-Dascot, Nicolas Servant, Yan Jaszczyszyn, Emmanuelle Jordi, et al. 2022. “DNA Methylation and Hydroxymethylation Characterize the Identity of D1 and D2 Striatal Projection Neurons.” Communications Biology 5 (1): 1–16. https://doi.org/10.1038/s42003-022-04269-w.
Carceller-Zazo, Elena, Lisa M. Sevilla, Omar Pons-Alonso, Álvaro Chiner-Oms, Larbi Amazit, Thi An Vu, Géraldine Vitellius, et al. 2022. “The Mineralocorticoid Receptor Modulates Timing and Location of Genomic Binding by Glucocorticoid Receptor in Response to Synthetic Glucocorticoids in Keratinocytes.” The FASEB Journal 37 (1): e22709. https://doi.org/10.1096/fj.202201199RR.
Bentaleb, Cyrine, Kévin Hervouet, Claire Montpellier, Charline Camuzet, Martin Ferrié, Julien Burlaud-Gaillard, Stéphane Bressanelli, et al. 2022. “The Endocytic Recycling Compartment Serves as a Viral Factory for Hepatitis E Virus.” Cellular and Molecular Life Sciences 79 (12): 615. https://doi.org/10.1007/s00018-022-04646-y.
Jaudoin, Céline, Isabelle Grillo, Fabrice Cousin, Maria Gehrke, Malika Ouldali, Ana-Andreea Arteni, Luc Picton, et al. 2022. “Hybrid Systems Combining Liposomes and Entangled Hyaluronic Acid Chains: Influence of Liposome Surface and Drug Encapsulation on the Microstructure.” Journal of Colloid and Interface Science 628 (December): 995–1007. https://doi.org/10.1016/j.jcis.2022.07.146.
Torres, Marta, Almudena Gonzalez-Mula, Delphine Naquin, and Denis Faure. 2022. “Construction of a Transposon Mutant Library in the Pathogen Agrobacterium Tumefaciens C58 and Identification of Genes Involved in Gall Niche Exploitation and Colonization.” In Microbial Environmental Genomics (MEG), edited by Francis Martin and Stephane Uroz, 209–26. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2871-3_11.
He, Nisha, Jingjing Zhou, Ornella Bimai, Jonathan Oltmanns, Jean-Luc Ravanat, Christophe Velours, Volker Schünemann, Marc Fontecave, and Béatrice Golinelli-Pimpaneau. 2022. “A Subclass of Archaeal U8-TRNA Sulfurases Requires a [4Fe–4S] Cluster for Catalysis.” Nucleic Acids Research, December, gkac1156. https://doi.org/10.1093/nar/gkac1156.
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