Molecular Assemblies
and Genome Integrity

Publications

Postic, Guillaume, Jessica Andreani, Julien Marcoux, Victor Reys, Raphaël Guerois, Julien Rey, Emmanuelle Mouton-Barbosa, et al. 2021. “Proteo3Dnet: A Web Server for the Integration of Structural Information with Interactomics Data.” Nucleic Acids Research 49 (W1): W567–72. https://doi.org/10.1093/nar/gkab332.
Quignot, Chloé, Guillaume Postic, Hélène Bret, Julien Rey, Pierre Granger, Samuel Murail, Pablo Chacón, Jessica Andreani, Pierre Tufféry, and Raphaël Guerois. 2021. “InterEvDock3: A Combined Template-Based and Free Docking Server with Increased Performance through Explicit Modeling of Complex Homologs and Integration of Covariation-Based Contact Maps.” Nucleic Acids Research 49 (W1): W277–84. https://doi.org/10.1093/nar/gkab358.
Porro, Antonio, Mohiuddin Mohiuddin, Christina Zurfluh, Vincent Spegg, Jingqi Dai, Florence Iehl, Virginie Ropars, et al. 2021. “FAN1-MLH1 Interaction Affects Repair of DNA Interstrand Cross-Links and Slipped-CAG/CTG Repeats.” Science Advances 7 (31): eabf7906. https://doi.org/10.1126/sciadv.abf7906.
Marsin, Stéphanie, Yazid Adam, Claire Cargemel, Jessica Andreani, Sonia Baconnais, Pierre Legrand, Ines Li de la Sierra-Gallay, et al. 2021. “Study of the DnaB:DciA Interplay Reveals Insights into the Primary Mode of Loading of the Bacterial Replicative Helicase.” Nucleic Acids Research 49 (11): 6569–86. https://doi.org/10.1093/nar/gkab463.
Dai, Jingqi, Aurore Sanchez, Céline Adam, Lepakshi Ranjha, Giordano Reginato, Pierre Chervy, Carine Tellier-Lebegue, et al. 2021. “Molecular Basis of the Dual Role of the Mlh1-Mlh3 Endonuclease in MMR and in Meiotic Crossover Formation.” Proceedings of the National Academy of Sciences of the United States of America 118 (23): e2022704118. https://doi.org/10.1073/pnas.2022704118.
Ma, Emilie, Laurent Maloisel, Léa Le Falher, Raphaël Guérois, and Eric Coïc. 2021. “Rad52 Oligomeric N-Terminal Domain Stabilizes Rad51 Nucleoprotein Filaments and Contributes to Their Protection against Srs2.” Cells 10 (6). https://doi.org/10.3390/cells10061467.
Ribeiro, Jonathan, Pauline Dupaigne, Cynthia Petrillo, Cécile Ducrot, Clotilde Duquenne, Xavier Veaute, Carole Saintomé, et al. 2021. “The Meiosis-Specific MEIOB-SPATA22 Complex Cooperates with RPA to Form a Compacted Mixed MEIOB/SPATA22/RPA/SsDNA Complex.” DNA Repair 102 (June): 103097. https://doi.org/10.1016/j.dnarep.2021.103097.
Vernekar, Dipti Vinayak, Giordano Reginato, Céline Adam, Lepakshi Ranjha, Florent Dingli, Marie-Claude Marsolier, Damarys Loew, et al. 2021. “The Pif1 Helicase Is Actively Inhibited during Meiotic Recombination Which Restrains Gene Conversion Tract Length.” Nucleic Acids Research 49 (8): 4522–33. https://doi.org/10.1093/nar/gkab232.
Quignot, Chloé, Pierre Granger, Pablo Chacón, Raphael Guerois, and Jessica Andreani. 2021. “Atomic-Level Evolutionary Information Improves Protein-Protein Interface Scoring.” Bioinformatics (Oxford, England), April, btab254. https://doi.org/10.1093/bioinformatics/btab254.
Mbianda, Johanne, May Bakail, Christophe André, Gwenaëlle Moal, Marie E. Perrin, Guillaume Pinna, Raphaël Guerois, et al. 2021. “Optimal Anchoring of a Foldamer Inhibitor of ASF1 Histone Chaperone through Backbone Plasticity.” Science Advances 7 (12): eabd9153. https://doi.org/10.1126/sciadv.abd9153.
Öz, Robin, Jing L. Wang, Raphael Guerois, Gaurav Goyal, Sriram Kk, Virginie Ropars, Rajhans Sharma, et al. 2021. “Dynamics of Ku and Bacterial Non-Homologous End-Joining Characterized Using Single DNA Molecule Analysis.” Nucleic Acids Research, February. https://doi.org/10.1093/nar/gkab083.
Rahman, Md Maminur, Mohiuddin Mohiuddin, Islam Shamima Keka, Kousei Yamada, Masataka Tsuda, Hiroyuki Sasanuma, Jessica Andreani, et al. 2020. “Genetic Evidence for the Involvement of Mismatch Repair Proteins, PMS2 and MLH3, in a Late Step of Homologous Recombination.” The Journal of Biological Chemistry 295 (51): 17460–75. https://doi.org/10.1074/jbc.RA120.013521.
Sanchez, Aurore, Céline Adam, Felix Rauh, Yann Duroc, Lepakshi Ranjha, Bérangère Lombard, Xiaojing Mu, et al. 2020. “Exo1 Recruits Cdc5 Polo Kinase to MutLγ to Ensure Efficient Meiotic Crossover Formation.” Proceedings of the National Academy of Sciences of the United States of America 117 (48): 30577–88. https://doi.org/10.1073/pnas.2013012117.
Shchegravina, Ekaterina S., Elena V. Svirshchevskaya, Sebastien Combes, Diane Allegro, Pascale Barbier, Benoit Gigant, Paloma F. Varela, et al. 2020. “Discovery of Dihydrofuranoallocolchicinoids - Highly Potent Antimitotic Agents with Low Acute Toxicity.” European Journal of Medicinal Chemistry 207 (December): 112724. https://doi.org/10.1016/j.ejmech.2020.112724.
Postic, Guillaume, Julien Marcoux, Victor Reys, Jessica Andreani, Yves Vandenbrouck, Marie-Pierre Bousquet, Emmanuelle Mouton-Barbosa, et al. 2020. “Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration.” Journal of Proteome Research 19 (7): 2807–20. https://doi.org/10.1021/acs.jproteome.0c00066.
Omrane, Mohyeddine, Amanda Souza Camara, Cyntia Taveneau, Nassima Benzoubir, Thibault Tubiana, Jinchao Yu, Raphaël Guérois, et al. 2020. “Septin 9 Has Two Polybasic Domains Critical to Septin Filament Assembly and Golgi Integrity.” IScience 13 (May): 138–53. https://doi.org/10.1016/j.isci.2019.02.015.
Takedachi, A., E. Despras, S. Scaglione, R. Guérois, J. H. Guervilly, M. Blin, S. Audebert, et al. 2020. “SLX4 Interacts with RTEL1 to Prevent Transcription-Mediated DNA Replication Perturbations.” Nature Structural & Molecular Biology 27 (5): 438–49. https://doi.org/10.1038/s41594-020-0419-3.
Nadaradjane, Aravindan Arun, Chloé Quignot, Seydou Traoré, Jessica Andreani, and Raphaël Guerois. 2020. “Docking Proteins and Peptides under Evolutionary Constraints in Critical Assessment of PRediction of Interactions Rounds 38 to 45.” Proteins: Structure, Function, and Bioinformatics 88 (8): 986–98. https://doi.org/https://doi.org/10.1002/prot.25857.
Andreani, Jessica, Chloe Quignot, and Raphael Guerois. 2020. “Structural Prediction of Protein Interactions and Docking Using Conservation and Coevolution.” Wiley Interdisciplinary Reviews-Computational Molecular Science 10 (6): e1470. https://doi.org/10.1002/wcms.1470.
Phongsavanh, Xaysongkhame, Noha Al-Qatabi, Mohammed Samer Shaban, Fawzi Khoder-Agha, Merwan El Asri, Martine Comisso, Raphaël Guérois, and Marc Mirande. 2020. “How HIV-1 Integrase Associates with Human Mitochondrial Lysyl-TRNA Synthetase.” Viruses 12 (10): 1202. https://doi.org/10.3390/v12101202.
Bakail, May, Albane Gaubert, Jessica Andreani, Gwenaëlle Moal, Guillaume Pinna, Ekaterina Boyarchuk, Marie-Cécile Gaillard, et al. 2019. “Design on a Rational Basis of High-Affinity Peptides Inhibiting the Histone Chaperone ASF1.” Cell Chemical Biology 26 (11): 1573-1585.e10. https://doi.org/10.1016/j.chembiol.2019.09.002.
Vilela, Fernando, Christophe Velours, Mélanie Chenon, Magali Aumont-Nicaise, Valérie Campanacci, Aurélien Thureau, Olena Pylypenko, Jessica Andreani, Paola Llinas, and Julie Ménétrey. 2019. “Structural Characterization of the RH1-LZI Tandem of JIP3/4 Highlights RH1 Domains as a Cytoskeletal Motor-Binding Motif.” Scientific Reports 9 (1): 16036. https://doi.org/10.1038/s41598-019-52537-3.
Hardy, Julien, Dingli Dai, Anissia Ait Saada, Ana Teixeira-Silva, Louise Dupoiron, Fatemeh Mojallali, Karine Fréon, Francoise Ochsenbein, Brigitte Hartmann, and Sarah Lambert. 2019. “Histone Deposition Promotes Recombination-Dependent Replication at Arrested Forks.” PLOS Genetics 15 (10): e1008441. https://doi.org/10.1371/journal.pgen.1008441.
Midonet, Caroline, Solange Miele, Evelyne Paly, Raphaël Guerois, and François-Xavier Barre. 2019. “The TLCΦ Satellite Phage Harbors a Xer Recombination Activation Factor.” Proceedings of the National Academy of Sciences of the United States of America 116 (37): 18391–96. https://doi.org/10.1073/pnas.1902905116.
Cromer, Laurence, Sylvie Jolivet, Dipesh Kumar Singh, Floriane Berthier, Nancy De Winne, Geert De Jaeger, Shinichiro Komaki, et al. 2019. “Patronus Is the Elusive Plant Securin, Preventing Chromosome Separation by Antagonizing Separase.” Proceedings of the National Academy of Sciences 116 (32): 16018–27. https://doi.org/10.1073/pnas.1906237116.
Fischböck-Halwachs, Josef, Sylvia Singh, Mia Potocnjak, Götz Hagemann, Victor Solis-Mezarino, Stephan Woike, Medini Ghodgaonkar-Steger, et al. 2019. “The COMA Complex Interacts with Cse4 and Positions Sli15/Ipl1 at the Budding Yeast Inner Kinetochore.” ELife 8 (May): e42879. https://doi.org/10.7554/eLife.42879.
Genera, Mariano, Damien Samson, Bertrand Raynal, Ahmed Haouz, Bruno Baron, Catherine Simenel, Raphael Guerois, Nicolas Wolff, and Célia Caillet-Saguy. 2019. “Structural and Functional Characterization of the PDZ Domain of the Human Phosphatase PTPN3 and Its Interaction with the Human Papillomavirus E6 Oncoprotein.” Scientific Reports 9 (1): 7438. https://doi.org/10.1038/s41598-019-43932-x.
Lisboa, Johnny, Louisa Celmal, Dyana Sanchez, Mathilde Marquis, Jessica Andreani, Raphael Guerois, Francoise Ochsenbein, et al. 2019. “The C-Terminal Domain of HpDprA Is a DNA-Binding Winged Helix Domain That Does Not Bind Double-Stranded DNA.” Febs Journal 286 (10): 1941–58. https://doi.org/10.1111/febs.14788.
Bakail, May, Silvia Rodriguez-Marin, Zsofia Hegedues, Marie E. Perrin, Francoise Ochsenbein, and Andrew J. Wilson. 2019. “Recognition of ASF1 by Using Hydrocarbon-Constrained Peptides.” Chembiochem 20 (7): 891–95. https://doi.org/10.1002/cbic.201800633.
Godau, Julia, Lorenza P. Ferretti, Anika Trenner, Emeline Dubois, Christine von Aesch, Antoine Marmignon, Lauriane Simon, et al. 2019. “Identification of a Miniature Sae2/Ctp1/CtIP Ortholog from Paramecium Tetraurelia Required for Sexual Reproduction and DNA Double-Strand Break Repair.” DNA Repair 77: 96–108. https://doi.org/10.1016/j.dnarep.2019.03.011.
Gantner, Johannes, Jana Ordon, Carola Kretschmer, Raphael Guerois, and Johannes Stuttmann. 2019. “An EDS1-SAG101 Complex Is Essential for TNL-Mediated Immunity in Nicotiana Benthamiana.” The Plant Cell 31 (10): 2456–74. https://doi.org/10.1105/tpc.19.00099.
Shi, Lei, Andrea Cavagnino, Jean-Luc Rabefiraisana, Noureddine Lazar, Inès Li de la Sierra-Gallay, Françoise Ochsenbein, Marie Valerio-Lepiniec, et al. 2019. “Structural Analysis of the Hanks-Type Protein Kinase YabT From Bacillus Subtilis Provides New Insights in Its DNA-Dependent Activation.” Frontiers in Microbiology 9: 3014. https://doi.org/10.3389/fmicb.2018.03014.
Nemoz, Clement, Virginie Ropars, Philippe Frit, Amandine Gontier, Pascal Drevet, Jinchao Yu, Raphael Guerois, et al. 2018. “XLF and APLF Bind Ku80 at Two Remote Sites to Ensure DNA Repair by Non-Homologous End Joining.” Nature Structural & Molecular Biology 25 (10): 971–80. https://doi.org/10.1038/s41594-018-0133-6.
Mileo, Elisabetta, Marianne Ilbert, Alessandro Barducci, Patricia Bordes, Marie-Pierre Castanié-Cornet, Cyrille Garnier, Pierre Genevaux, et al. 2018. “Emerging Fields in Chaperone Proteins: A French Workshop.” Biochimie 151 (August): 159–65. https://doi.org/10.1016/j.biochi.2018.06.004.
Nguyen, T. Quyen, Magali Aumont-Niçaise, Jessica Andreani, Christophe Velours, Mélanie Chenon, Fernando Vilela, Clémentine Geneste, Paloma Fernández Varela, Paola Llinas, and Julie Ménétrey. 2018. “Characterization of the Binding Mode of JNK-Interacting Protein 1 (JIP1) to Kinesin-Light Chain 1 (KLC1).” The Journal of Biological Chemistry 293 (36): 13946–60. https://doi.org/10.1074/jbc.RA118.003916.
Ma, Emilie, Pauline Dupaigne, Laurent Maloisel, Raphaël Guerois, Eric Le Cam, and Eric Coïc. 2018. “Rad52-Rad51 Association Is Essential to Protect Rad51 Filaments against Srs2, but Facultative for Filament Formation.” ELife 7 (July): e32744. https://doi.org/10.7554/eLife.32744.
Visweshwaran, Sai P., Peter A. Thomason, Raphael Guerois, Sophie Vacher, Evgeny V. Denisov, Lubov A. Tashireva, Maria E. Lomakina, et al. 2018. “The Trimeric Coiled-Coil HSBP1 Protein Promotes WASH Complex Assembly at Centrosomes.” The EMBO Journal 37 (13): e97706. https://doi.org/10.15252/embj.201797706.
Quignot, Chloé, Julien Rey, Jinchao Yu, Pierre Tufféry, Raphaël Guerois, and Jessica Andreani. 2018. “InterEvDock2: An Expanded Server for Protein Docking Using Evolutionary and Biological Information from Homology Models and Multimeric Inputs.” Nucleic Acids Research 46 (W1): W408–16. https://doi.org/10.1093/nar/gky377.
Fernandes, Joiselle Blanche, Marine Duhamel, Mathilde Seguéla-Arnaud, Nicole Froger, Chloé Girard, Sandrine Choinard, Victor Solier, et al. 2018. “FIGL1 and Its Novel Partner FLIP Form a Conserved Complex That Regulates Homologous Recombination.” Edited by Michael Lichten. PLOS Genetics 14 (4): e1007317. https://doi.org/10.1371/journal.pgen.1007317.
Lecoq, Lauriane, Shishan Wang, Thomas Wiegand, Stéphane Bressanelli, Michael Nassal, Beat H. Meier, and Anja Böckmann. 2018. “Solid-State [13C-15N] NMR Resonance Assignment of Hepatitis B Virus Core Protein.” Biomolecular NMR Assignments 12 (1): 205–14. https://doi.org/10.1007/s12104-018-9810-y.
Abdollahi, Nika, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, et al. 2018. “Meet-U: Educating through Research Immersion.” PLoS Computational Biology 14 (3): e1005992. https://doi.org/10.1371/journal.pcbi.1005992.
Adam, Céline, Raphaël Guérois, Anna Citarella, Laura Verardi, Florine Adolphe, Claire Béneut, Vérane Sommermeyer, et al. 2018. “The PHD Finger Protein Spp1 Has Distinct Functions in the Set1 and the Meiotic DSB Formation Complexes.” Edited by Michael Lichten. PLOS Genetics 14 (2): e1007223. https://doi.org/10.1371/journal.pgen.1007223.
Grzela, Renata, Julien Nusbaum, Sonia Fieulaine, Francesco Lavecchia, Michel Desmadril, Naima Nhiri, Alain Van Dorsselaer, et al. 2018. “Peptide Deformylases from Vibrio Parahaemolyticus Phage and Bacteria Display Similar Deformylase Activity and Inhibitor Binding Clefts.” Biochimica Et Biophysica Acta 1866 (2): 348–55. https://doi.org/10.1016/j.bbapap.2017.10.007.
De Muyt, Arnaud, Alexandra Pyatnitskaya, Jessica Andréani, Lepakshi Ranjha, Claire Ramus, Raphaëlle Laureau, Ambra Fernandez-Vega, et al. 2018. “A Meiotic XPF–ERCC1-like Complex Recognizes Joint Molecule Recombination Intermediates to Promote Crossover Formation.” Genes & Development 32 (3–4): 283–96. https://doi.org/10.1101/gad.308510.117.
Berto, Alessandro, Jinchao Yu, Stéphanie Morchoisne-Bolhy, Chiara Bertipaglia, Richard Vallee, Julien Dumont, Francoise Ochsenbein, Raphael Guerois, and Valérie Doye. 2018. “Disentangling the Molecular Determinants for Cenp-F Localization to Nuclear Pores and Kinetochores.” EMBO Reports 19 (5): e44742. https://doi.org/10.15252/embr.201744742.
Hutinet, Geoffrey, Arthur Besle, Olivier Son, Stephen McGovern, Raphaël Guerois, Marie-Agnès Petit, Françoise Ochsenbein, and François Lecointe. 2018. “Sak4 of Phage HK620 Is a RecA Remote Homolog With Single-Strand Annealing Activity Stimulated by Its Cognate SSB Protein.” Frontiers in Microbiology 9: 743. https://doi.org/10.3389/fmicb.2018.00743.
Nadaradjane, Aravindan Arun, Raphael Guerois, and Jessica Andreani. 2018. “Protein-Protein Docking Using Evolutionary Information.” In Protein Complex Assembly, edited by Joseph A. Marsh, 1764:429–47. New York, NY: Springer New York. https://doi.org/10.1007/978-1-4939-7759-8_28.
Celma, Louisa, Christopher Corbinais, Julien Vercruyssen, Xavier Veaute, Inès Li de la Sierra-Gallay, Raphaël Guérois, Didier Busso, et al. 2017. “Structural Basis for the Substrate Selectivity of Helicobacter Pylori NucT Nuclease Activity.” Edited by Concepción Gonzalez-Bello. PLOS ONE 12 (12): e0189049. https://doi.org/10.1371/journal.pone.0189049.
Méneret, Aurélie, Elizabeth A. Franz, Oriane Trouillard, Thomas C. Oliver, Yvrick Zagar, Stephen P. Robertson, Quentin Welniarz, et al. 2017. “Mutations in the Netrin-1 Gene Cause Congenital Mirror Movements.” The Journal of Clinical Investigation 127 (11): 3923–36. https://doi.org/10.1172/JCI95442.
Caillet-Saguy, Célia, Angelo Toto, Raphael Guerois, Pierre Maisonneuve, Eva di Silvio, Kristi Sawyer, Stefano Gianni, and Nicolas Wolff. 2017. “Regulation of the Human Phosphatase PTPN4 by the Inter-Domain Linker Connecting the PDZ and the Phosphatase Domains.” Scientific Reports 7 (1): 7875. https://doi.org/10.1038/s41598-017-08193-6.
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