Regulatory RNAs in Clostridia

Saunier, Marion, Louis-Charles Fortier, and Olga Soutourina. 2024. “RNA-Based Regulation in Bacteria-Phage Interactions.” Anaerobe, April, 102851. https://doi.org/10.1016/j.anaerobe.2024.102851.

Muzyukina, Polina, Anton Shkaruta, Noemi M. Guzman, Jessica Andreani, Adair L. Borges, Joseph Bondy-Denomy, Anna Maikova, Ekaterina Semenova, Konstantin Severinov, and Olga Soutourina. 2023. “Identification of an Anti-CRISPR Protein That Inhibits the CRISPR-Cas Type I-B System in Clostridioides Difficile.” MSphere, November, e0040123. https://doi.org/10.1128/msphere.00401-23.

Muzyukina, P., and O. Soutourina. 2023. “CRISPR Genotyping Methods: Tracing the Evolution from Spoligotyping to Machine Learning.” Biochimie, July, S0300-9084(23)00178-5. https://doi.org/10.1016/j.biochi.2023.07.017.

Pavao, Aidan, Brintha Girinathan, Johann Peltier, Pamela Altamirano Silva, Bruno Dupuy, Isabella H. Muti, Craig Malloy, Leo L. Cheng, and Lynn Bry. 2023. “Elucidating Dynamic Anaerobe Metabolism with HRMAS 13C NMR and Genome-Scale Modeling.” Nature Chemical Biology, March. https://doi.org/10.1038/s41589-023-01275-9.

Royer, Alexia L. M., Andrew A. Umansky, Marie-Maude Allen, Julian R. Garneau, Maicol Ospina-Bedoya, Joseph A. Kirk, Gregory Govoni, Robert P. Fagan, Olga Soutourina, and Louis-Charles Fortier. 2023. “Clostridioides Difficile S-Layer Protein A (SlpA) Serves as a General Phage Receptor.” Microbiology Spectrum, February, e0389422. https://doi.org/10.1128/spectrum.03894-22.

Altamirano-Silva, Pamela, Jazmín Meza-Torres, Ana Mariel Zúñiga-Pereira, Sigrid Zamora-Jaen, Natalia Pietrosemoli, Gabriela Cantos, Johann Peltier, et al. 2023. “Phenotypes Controlled by the Brucella Abortus Two Component System BvrR/BvrS Are Differentially Impacted by BvrR Phosphorylation.” Frontiers in Microbiology 14: 1148233. https://doi.org/10.3389/fmicb.2023.1148233.

Oberkampf, Marine, Audrey Hamiot, Pamela Altamirano-Silva, Paula Bellés-Sancho, Yannick D. N. Tremblay, Nicholas DiBenedetto, Roland Seifert, et al. 2022. “C-Di-AMP Signaling Is Required for Bile Salt Resistance, Osmotolerance, and Long-Term Host Colonization by Clostridioides Difficile.” Science Signaling 15 (750): eabn8171. https://doi.org/10.1126/scisignal.abn8171.

Hommais, Florence, and Olga Soutourina. 2022. “Editorial: Roles of Regulatory RNAs in Bacterial Pathogens.” Frontiers in Microbiology 13 (June). https://www.frontiersin.org/articles/10.3389/fmicb.2022.915005.

Kreis, Victor, and Olga Soutourina. 2022. “Clostridioides Difficile – Phage Relationship the RNA Way.” Current Opinion in Microbiology 66 (April): 1–10. https://doi.org/10.1016/j.mib.2021.11.012.

Oliveira Paiva, Ana M., Annemieke H. Friggen, Roxanne Douwes, Bert Wittekoek, and Wiep Klaas Smits. 2022. “Practical Observations on the Use of Fluorescent Reporter Systems in Clostridioides Difficile.” Antonie van Leeuwenhoek, January. https://doi.org/10.1007/s10482-021-01691-8.

Girinathan, Brintha P., Nicholas DiBenedetto, Jay N. Worley, Johann Peltier, Mario L. Arrieta-Ortiz, Selva Rupa Christinal Immanuel, Richard Lavin, et al. 2021. “In Vivo Commensal Control of Clostridioides Difficile Virulence.” Cell Host & Microbe, October, S1931-3128(21)00423-6. https://doi.org/10.1016/j.chom.2021.09.007.

Arrieta-Ortiz, Mario L., Selva Rupa Christinal Immanuel, Serdar Turkarslan, Wei-Ju Wu, Brintha P. Girinathan, Jay N. Worley, Nicholas DiBenedetto, et al. 2021. “Predictive Regulatory and Metabolic Network Models for Systems Analysis of Clostridioides Difficile.” Cell Host & Microbe, October, S1931-3128(21)00424-8. https://doi.org/10.1016/j.chom.2021.09.008.

Maikova, Anna, Pierre Boudry, Anna Shiriaeva, Aleksandra Vasileva, Anaïs Boutserin, Sofia Medvedeva, Ekaterina Semenova, Konstantin Severinov, and Olga Soutourina. 2021. “Protospacer-Adjacent Motif Specificity during Clostridioides Difficile Type I-B CRISPR-Cas Interference and Adaptation.” MBio 12 (4): e0213621. https://doi.org/10.1128/mBio.02136-21.

Garcia-Garcia, Transito, Sandrine Poncet, Elodie Cuenot, Thibaut Douché, Quentin Giai Gianetto, Johann Peltier, Pascal Courtin, et al. 2021. “Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides Difficile.” MBio 12 (3): e00519-21. https://doi.org/10.1128/mBio.00519-21.

Boudry, Pierre, Emma Piattelli, Emilie Drouineau, Johann Peltier, Anaïs Boutserin, Maxence Lejars, Eliane Hajnsdorf, et al. 2021. “Identification of RNAs Bound by Hfq Reveals Widespread RNA Partners and a Sporulation Regulator in the Human Pathogen Clostridioides Difficile.” RNA Biology, February, 1–22. https://doi.org/10.1080/15476286.2021.1882180.

Dawson, Lisa F., Johann Peltier, Catherine L. Hall, Mark A. Harrison, Maria Derakhshan, Helen A. Shaw, Neil F. Fairweather, and Brendan W. Wren. 2021. “Extracellular DNA, Cell Surface Proteins and c-Di-GMP Promote Biofilm Formation in Clostridioides Difficile.” Scientific Reports 11 (1): 3244. https://doi.org/10.1038/s41598-020-78437-5.

Peltier, Johann, Audrey Hamiot, Julian R. Garneau, Pierre Boudry, Anna Maikova, Eliane Hajnsdorf, Louis-Charles Fortier, Bruno Dupuy, and Olga Soutourina. 2020. “Type I Toxin-Antitoxin Systems Contribute to the Maintenance of Mobile Genetic Elements in Clostridioides Difficile.” Communications Biology 3 (1): 1–13. https://doi.org/10.1038/s42003-020-01448-5.

Piattelli, Emma, Johann Peltier, and Olga Soutourina. 2020. “Interplay between Regulatory RNAs and Signal Transduction Systems during Bacterial Infection.” Genes 11 (10): 1209. https://doi.org/10.3390/genes11101209.

Soutourina, Olga, Thomas Dubois, Marc Monot, Pavel V. Shelyakin, Laure Saujet, Pierre Boudry, Mikhail S. Gelfand, Bruno Dupuy, and Isabelle Martin-Verstraete. 2020. “Genome-Wide Transcription Start Site Mapping and Promoter Assignments to a Sigma Factor in the Human Enteropathogen Clostridioides Difficile.” Frontiers in Microbiology 11: 1939. https://doi.org/10.3389/fmicb.2020.01939.

Maikova, Anna, Victor Kreis, Anaïs Boutserin, Konstantin Severinov, and Olga Soutourina. 2019. “Using Endogenous CRISPR-Cas System for Genome Editing in the Human Pathogen Clostridium Difficile.” Applied and Environmental Microbiology 85 (20): e01416. https://doi.org/10.1128/AEM.01416-19.

Soutourina, Olga. 2019. “Type I Toxin-Antitoxin Systems in Clostridia.” Toxins 11 (5): 253. https://doi.org/10.3390/toxins11050253.

Maikova, Anna, Johann Peltier, Pierre Boudry, Eliane Hajnsdorf, Nicolas Kint, Marc Monot, Isabelle Poquet, Isabelle Martin-Verstraete, Bruno Dupuy, and Olga Soutourina. 2018. “Discovery of New Type I Toxin-Antitoxin Systems Adjacent to CRISPR Arrays in Clostridium Difficile.” Nucleic Acids Research 46 (9): 4733–51. https://doi.org/10.1093/nar/gky124.

Garneau, Julian R., Ognjen Sekulovic, Bruno Dupuy, Olga Soutourina, Marc Monot, and Louis-Charles Fortier. 2018. “High Prevalence and Genetic Diversity of Large PhiCD211 (PhiCDIF1296T)-Like Prophages in Clostridioides Difficile.” Applied and Environmental Microbiology 84 (3): e02164-17. https://doi.org/10.1128/AEM.02164-17.

Maikova, Anna, Konstantin Severinov, and Olga Soutourina. 2018. “New Insights Into Functions and Possible Applications of Clostridium Difficile CRISPR-Cas System.” Frontiers in Microbiology 9: 1740. https://doi.org/10.3389/fmicb.2018.01740.

Poquet, Isabelle, Laure Saujet, Alexis Canette, Marc Monot, Jovanna Mihajlovic, Jean-Marc Ghigo, Olga Soutourina, Romain Briandet, Isabelle Martin-Verstraete, and Bruno Dupuy. 2018. “Clostridium Difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture.” Frontiers in Microbiology 9: 2084. https://doi.org/10.3389/fmicb.2018.02084.

Soutourina, Olga. 2017. “RNA-Based Control Mechanisms of Clostridium Difficile.” Current Opinion in Microbiology 36 (February): 62–68. https://doi.org/10.1016/j.mib.2017.01.004.

Kint, Nicolas, Claire Janoir, Marc Monot, Sandra Hoys, Olga Soutourina, Bruno Dupuy, and Isabelle Martin-Verstraete. 2017. “The Alternative Sigma Factor σ(B) Plays a Crucial Role in Adaptive Strategies of Clostridium Difficile during Gut Infection.” Environmental Microbiology, February. https://doi.org/10.1111/1462-2920.13696.

Peltier, Johann, and Olga Soutourina. 2017. “Identification of C-Di-GMP-Responsive Riboswitches.” Methods in Molecular Biology (Clifton, N.J.) 1657: 377–402. https://doi.org/10.1007/978-1-4939-7240-1_29.