Biochemistry, Biophysics and Structural Biology Department

Publications

Publications in 2022

Shenoy, Jayakrishna, Alons Lends, Mélanie Berbon, Muhammed Bilal, Nadia El Mammeri, Mathilde Bertoni, Ahmad Saad, et al. 2023. “Structural Polymorphism of the Low-Complexity C-Terminal Domain of TDP-43 Amyloid Aggregates Revealed by Solid-State NMR.” Frontiers in Molecular Biosciences 10: 1148302. https://doi.org/10.3389/fmolb.2023.1148302.

Dieudonné, Thibaud, Christine Jaxel, Maylis Lejeune, Guillaume Lenoir, and Cédric Montigny. 2023. “Expression in Saccharomyces Cerevisiae and Purification of a Human Phospholipid Flippase.” Methods in Molecular Biology (Clifton, N.J.) 2652: 231–46. https://doi.org/10.1007/978-1-0716-3147-8_13.

Andreani, Jessica, Brian Jiménez-García, and Masahito Ohue. 2023. “Editorial: Web Tools for Modeling and Analysis of Biomolecular Interactions Volume II.” Frontiers in Molecular Biosciences 10: 1190855. https://doi.org/10.3389/fmolb.2023.1190855.

Fieulaine, Sonia, Thibault Tubiana, and Stéphane Bressanelli. 2023. “Hepatitis E Virus RNA Replication Polyprotein: Taking Structural Biology Seriously.” Frontiers in Microbiology 14: 1254741. https://doi.org/10.3389/fmicb.2023.1254741.

Pible, Olivier, Pauline Petit, Gérard Steinmetz, Corinne Rivasseau, and Jean Armengaud. 2023. “Taxonomical Composition and Functional Analysis of Biofilms Sampled from a Nuclear Storage Pool.” Frontiers in Microbiology 14: 1148976. https://doi.org/10.3389/fmicb.2023.1148976.

Fieulaine, Sonia, Thibault Tubiana, and Stéphane Bressanelli. 2023. “De Novo Modelling of HEV Replication Polyprotein: Five-Domain Breakdown and Involvement of Flexibility in Functional Regulation.” Virology 578 (January): 128–40. https://doi.org/10.1016/j.virol.2022.12.002.

Cargemel, Claire, Sonia Baconnais, Magali Aumont-Nicaise, Magali Noiray, Lia Maurin, Jessica Andreani, Hélène Walbott, et al. 2023. “Structural Insights of the DciA Helicase Loader in Its Relationship with DNA.” International Journal of Molecular Sciences 24 (2): 1427. https://doi.org/10.3390/ijms24021427.

Singh, Dipesh Kumar, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene, Geert De Jaeger, Imran Siddiqi, Raphael Guerois, Wayne Crismani, and Raphael Mercier. 2023. “The FANCC-FANCE-FANCF Complex Is Evolutionarily Conserved and Regulates Meiotic Recombination.” Nucleic Acids Research, January, gkac1244. https://doi.org/10.1093/nar/gkac1244.

Schvartz, Marion, Florent Saudrais, Stéphanie Devineau, Jean-Christophe Aude, Stéphane Chédin, Céline Henry, Aarón Millán-Oropeza, et al. 2023. “A Proteome Scale Study Reveals How Plastic Surfaces and Agitation Promote Protein Aggregation.” Scientific Reports 13 (1): 1227. https://doi.org/10.1038/s41598-023-28412-7.

Gomes, M., A. Fleck, A. Degaugue, F. Gourmelon, C. Léger, M. Aumont-Nicaise, A. Mesneau, et al. 2023. “Design of an Artificial Phage-Display Library Based on a New Scaffold Improved for Average Stability of the Randomized Proteins.” Scientific Reports 13 (1): 1339. https://doi.org/10.1038/s41598-023-27710-4.

Daugeron, Marie-Claire, Sophia Missoury, Violette Da Cunha, Noureddine Lazar, Bruno Collinet, Herman van Tilbeurgh, and Tamara Basta. 2023. “A Paralog of Pcc1 Is the Fifth Core Subunit of the KEOPS TRNA-Modifying Complex in Archaea.” Nature Communications 14 (1): 526. https://doi.org/10.1038/s41467-023-36210-y.

Cargemel, Claire, Stéphanie Marsin, Magali Noiray, Pierre Legrand, Halil Bounoua, Inès Li de la Sierra-Gallay, Hélène Walbott, and Sophie Quevillon-Cheruel. 2023. “The LH-DH Module of Bacterial Replicative Helicases Is the Common Binding Site for DciA and Other Helicase Loaders.” Acta Crystallographica. Section D, Structural Biology 79 (Pt 2): 177–87. https://doi.org/10.1107/S2059798323000281.

Messant, Marine, Umama Hani, Thaïs Hennebelle, Florence Guérard, Bertrand Gakière, Andrew Gall, Sébastien Thomine, and Anja Krieger-Liszkay. 2023. “Manganese Concentration Affects Chloroplast Structure and the Photosynthetic Apparatus in Marchantia Polymorpha.” Plant Physiology, February, kiad052. https://doi.org/10.1093/plphys/kiad052.

Ceppi, Ilaria, Elda Cannavo, Hélène Bret, Rosa Camarillo, Francesca Vivalda, Roshan Singh Thakur, Amador Romero-Franco, et al. 2023. “PLK1 Regulates CtIP and DNA2 Interplay in Long-Range DNA End Resection.” Genes & Development, February. https://doi.org/10.1101/gad.349981.122.

Bělíček, Jakub, Eva Ľuptáková, David Kopečný, Jan Frömmel, Armelle Vigouroux, Sanja Ćavar Zeljković, Franjo Jagic, et al. 2023. “Biochemical Ans Structural Basis of Polyamine, Lysine and Ornithine Acetylation Catalyzed by Spermine/Spermidine N-Acetyl Transferase in Moss and Maize.” The Plant Journal: For Cell and Molecular Biology, February. https://doi.org/10.1111/tpj.16148.

Travin, Dmitrii Y., Romain Jouan, Armelle Vigouroux, Satomi Inaba-Inoue, Joy Lachat, Fazal Haq, Tatiana Timchenko, et al. 2023. “Dual-Uptake Mode of the Antibiotic Phazolicin Prevents Resistance Acquisition by Gram-Negative Bacteria.” MBio, February, e0021723. https://doi.org/10.1128/mbio.00217-23.

Audoynaud, Charlotte, Kamila Schirmeisen, Anissia Ait Saada, Armelle Gesnik, Paloma Fernández-Varela, Virginie Boucherit, Virginie Ropars, et al. 2023. “RNA:DNA Hybrids from Okazaki Fragments Contribute to Establish the Ku-Mediated Barrier to Replication-Fork Degradation.” Molecular Cell, February, S1097-2765(23)00106-5. https://doi.org/10.1016/j.molcel.2023.02.008.

Leccese, Silvia, Adjélé Wilson, Diana Kirilovsky, Riccardo Spezia, Claude Jolivalt, and Alberto Mezzetti. 2023. “Light-Induced Infrared Difference Spectroscopy on Three Different Forms of Orange Carotenoid Protein: Focus on Carotenoid Vibrations.” Photochemical & Photobiological Sciences: Official Journal of the European Photochemistry Association and the European Society for Photobiology, February. https://doi.org/10.1007/s43630-023-00384-7.

Marcelot, Agathe, Felipe Rodriguez-Tirado, Philippe Cuniasse, Mei-Ling Joiner, Simona Miron, Alexey A. Soshnev, Mimi Fang, et al. 2023. “A De Novo Sequence Variant in Barrier-to-Autointegration Factor Is Associated with Dominant Motor Neuronopathy.” Cells 12 (6): 847. https://doi.org/10.3390/cells12060847.

Mezzetti, Alberto, Jean-François Paul, and Winfried Leibl. 2023. “Identification of a Ubiquinone-Ubiquinol Quinhydrone Complex in Bacterial Photosynthetic Membranes and Isolated Reaction Centers by Time-Resolved Infrared Spectroscopy.” International Journal of Molecular Sciences 24 (6): 5233. https://doi.org/10.3390/ijms24065233.

Roux, Michel, François-Xavier Legrand, Abed Bil, Véronique Bonnet, and Florence Djedaini-Pilard. 2023. “Fragmentation of DMPC Membranes by a Wedge-Shaped Amphiphilic Cyclodextrin into Bicellar-like Aggregates.” The Journal of Physical Chemistry. B, March. https://doi.org/10.1021/acs.jpcb.2c07331.

Moreaud, Laureen, Sébastien Viollet, Agathe Urvoas, Marie Valerio-Lepiniec, Agnès Mesneau, Inès Li de la Sierra-Gallay, Jessalyn Miller, et al. 2023. “Design, Synthesis, and Characterization of Protein Origami Based on Self-Assembly of a Brick and Staple Artificial Protein Pair.” Proceedings of the National Academy of Sciences of the United States of America 120 (11): e2218428120. https://doi.org/10.1073/pnas.2218428120.

Misuan, Nurhamimah, Saharuddin Mohamad, Thibault Tubiana, and Michelle Khai Khun Yap. 2023. “Ensemble-Based Molecular Docking and Spectrofluorometric Analysis of Interaction between Cytotoxin and Tumor Necrosis Factor Receptor 1.” Journal of Biomolecular Structure & Dynamics, March, 1–15. https://doi.org/10.1080/07391102.2023.2188945.

Schvartz, Marion, Florent Saudrais, Stéphanie Devineau, Stéphane Chédin, Frédéric Jamme, Jocelyne Leroy, Karol Rakotozandriny, et al. 2023. “Role of the Protein Corona in the Colloidal Behavior of Microplastics.” Langmuir: The ACS Journal of Surfaces and Colloids, March. https://doi.org/10.1021/acs.langmuir.2c03237.

Tabares, Leandro C., Davis T. Daniel, José Luis Vázquez-Ibar, Cyrille Kouklovsky, Valérie Alezra, and Sun Un. 2023. “Using the Noncanonical Metallo-Amino Acid [Cu(II)(2,2’-Bipyridin-5-Yl)]-Alanine to Study the Structures of Proteins.” The Journal of Physical Chemistry Letters, March, 3368–75. https://doi.org/10.1021/acs.jpclett.3c00196.

Samire, Poutoum P., Bo Zhuang, Bertrand Légeret, Ángel Baca-Porcel, Gilles Peltier, Damien Sorigué, Alexey Aleksandrov, Frédéric Beisson, and Pavel Müller. 2023. “Autocatalytic Effect Boosts the Production of Medium-Chain Hydrocarbons by Fatty Acid Photodecarboxylase.” Science Advances 9 (13): eadg3881. https://doi.org/10.1126/sciadv.adg3881.

Boussac, Alain, Julien Sellés, and Miwa Sugiura. 2023. “Energetics and Proton Release in Photosystem II from Thermosynechococcus Elongatus with a D1 Protein Encoded by Either the PsbA2 or PsbA3 Gene.” Biochimica Et Biophysica Acta. Bioenergetics 1864 (3): 148979. https://doi.org/10.1016/j.bbabio.2023.148979.

Taouis, Karim, Sophie Vacher, Josée Guirouilh-Barbat, Jacques Camonis, Etienne Formstecher, Tatiana Popova, Anne-Sophie Hamy, et al. 2023. “WWOX Binds MERIT40 and Modulates Its Function in Homologous Recombination, Implications in Breast Cancer.” Cancer Gene Therapy, May. https://doi.org/10.1038/s41417-023-00626-x.

Hardwick, Steven W., Antonia Kefala Stavridi, Dimitri Y. Chirgadze, Taiana Maia De Oliveira, Jean-Baptiste Charbonnier, Virginie Ropars, Katheryn Meek, Tom L. Blundell, and Amanda K. Chaplin. 2023. “Cryo-EM Structure of a DNA-PK Trimer: Higher Order Oligomerisation in NHEJ.” Structure (London, England: 1993), May, S0969-2126(23)00167-3. https://doi.org/10.1016/j.str.2023.05.013.

Seif-El-Dahan, Murielle, Antonia Kefala-Stavridi, Philippe Frit, Steven W. Hardwick, Dima Y. Chirgadze, Taiana Maia De Oliviera, Sébastien Britton, et al. 2023. “PAXX Binding to the NHEJ Machinery Explains Functional Redundancy with XLF.” Science Advances 9 (22): eadg2834. https://doi.org/10.1126/sciadv.adg2834.

Labidi, Raphaël J., Bruno Faivre, Philippe Carpentier, Giulia Veronesi, Albert Solé-Daura, Ragnar Bjornsson, Christophe Léger, et al. 2023. “Light-Driven Hydrogen Evolution Reaction Catalyzed by a Molybdenum-Copper Artificial Hydrogenase.” Journal of the American Chemical Society, June. https://doi.org/10.1021/jacs.3c01350.

Wang, Yanan, Giovanni Chiappetta, Raphaël Guérois, Yijun Liu, Stéphane Romero, Daniel J. Boesch, Matthias Krause, et al. 2023. “PPP2R1A Regulates Migration Persistence through the NHSL1-Containing WAVE Shell Complex.” Nature Communications 14 (1): 3541. https://doi.org/10.1038/s41467-023-39276-w.

Kra, Kalouna, Siyu Li, Laetitia Gargowitsch, Jéril Degrouard, Javier Pérez, Roya Zandi, Stéphane Bressanelli, and Guillaume Tresset. 2023. “Energetics and Kinetic Assembly Pathways of Hepatitis B Virus Capsids in the Presence of Antivirals.” ACS Nano, June. https://doi.org/10.1021/acsnano.3c03595.

Perrin, Marie E., Bo Li, Johanne Mbianda, May Bakail, Christophe André, Gwenaëlle Moal, Pierre Legrand, et al. 2023. “Unexpected Binding Modes of Inhibitors to the Histone Chaperone ASF1 Revealed by a Foldamer Scanning Approach.” Chemical Communications (Cambridge, England), June. https://doi.org/10.1039/d3cc01891a.

Schweke, Hugo, Qifang Xu, Gerardo Tauriello, Lorenzo Pantolini, Torsten Schwede, Frédéric Cazals, Alix Lhéritier, et al. 2023. “Discriminating Physiological from Non-Physiological Interfaces in Structures of Protein Complexes: A Community-Wide Study.” Proteomics, June, e2200323. https://doi.org/10.1002/pmic.202200323.

Čopič, Alenka, Thibaud Dieudonné, and Guillaume Lenoir. 2023. “Phosphatidylserine Transport in Cell Life and Death.” Current Opinion in Cell Biology 83 (July): 102192. https://doi.org/10.1016/j.ceb.2023.102192.

Feelisch, Martin, Anna D. Clark, Andrew F. Cumpstey, Jérôme Santolini, and Alan A. Jackson. 2023. “Long COVID: Potential Role of the Reactive Species Interactome.” The Journal of Infection, July, S0163-4453(23)00376-6. https://doi.org/10.1016/j.jinf.2023.07.004.

Renouard, Emilie, Magdalena Nowinska, Fabien Lacombat, Pascal Plaza, Pavel Müller, and Agathe Espagne. 2023. “Multiscale Transient Absorption Study of the Fluorescent Protein Dreiklang and Two Point Variants Provides Insight into Photoswitching and Nonproductive Reaction Pathways.” The Journal of Physical Chemistry Letters, July, 6477–85. https://doi.org/10.1021/acs.jpclett.3c00431.

Szatkownik, Antoine, Diego Javier Zea, Hugues Richard, and Elodie Laine. 2023. “Building Alternative Splicing and Evolution-Aware Sequence-Structure Maps for Protein Repeats.” Journal of Structural Biology, July, 107997. https://doi.org/10.1016/j.jsb.2023.107997.

Steunou, Anne-Soisig, Marion Babot, Anne Durand, Marie-Line Bourbon, Sylviane Liotenberg, Guylaine Miotello, Jean Armengaud, and Soufian Ouchane. 2023. “Discriminating Susceptibility of Xanthine Oxidoreductase Family to Metals.” Microbiology Spectrum, July, e0481422. https://doi.org/10.1128/spectrum.04814-22.

Gotico, Philipp, Zakaria Halime, Winfried Leibl, and Ally Aukauloo. 2023. “Bimetallic Molecular Catalyst Design for Carbon Dioxide Reduction.” ChemPlusChem, July, e202300222. https://doi.org/10.1002/cplu.202300222.

Monticelli, Serena, Alex Talbot, Philipp Gotico, Fabien Caillé, Olivier Loreau, Antonio Del Vecchio, Augustin Malandain, et al. 2023. “Unlocking Full and Fast Conversion in Photocatalytic Carbon Dioxide Reduction for Applications in Radio-Carbonylation.” Nature Communications 14 (1): 4451. https://doi.org/10.1038/s41467-023-40136-w.

Petit, Pauline, Karim Hayoun, Béatrice Alpha-Bazin, Jean Armengaud, and Corinne Rivasseau. 2023. “First Isolation and Characterization of Bacteria from the Core’s Cooling Pool of an Operating Nuclear Reactor.” Microorganisms 11 (8): 1871. https://doi.org/10.3390/microorganisms11081871.

Brookes, Emre, Mattia Rocco, Patrice Vachette, and Jill Trewhella. 2023. “AlphaFold-Predicted Protein Structures and Small-Angle X-Ray Scattering: Insights from an Extended Examination of Selected Data in the Small-Angle Scattering Biological Data Bank.” Journal of Applied Crystallography 56 (Pt 4): 910–26. https://doi.org/10.1107/S1600576723005344.

Liu, Siyu, Judith Miné-Hattab, Marie Villemeur, Raphaël Guerois, Henrik Dahl Pinholt, Leonid A. Mirny, and Angela Taddei. 2023. “In Vivo Tracking of Functionally Tagged Rad51 Unveils a Robust Strategy of Homology Search.” Nature Structural & Molecular Biology, August. https://doi.org/10.1038/s41594-023-01065-w.

Gareil, Nelly, Alison Gervais, Nicolas Macaisne, Guillaume Chevreux, Julie C. Canman, Jessica Andreani, and Julien Dumont. 2023. “An Unconventional TOG Domain Is Required for CLASP Localization.” Current Biology: CB 33 (16): 3522-3528.e7. https://doi.org/10.1016/j.cub.2023.07.009.

Leverne, Lucas, Thomas Roach, François Perreau, Fabienne Maignan, and Anja Krieger-Liszkay. 2023. “Increased Drought Resistance in State Transition Mutants Is Linked to Modified Plastoquinone Pool Redox State.” Plant, Cell & Environment, August. https://doi.org/10.1111/pce.14695.

Clark, Anna D., Andrew F. Cumpstey, Jérôme Santolini, Alan A. Jackson, and Martin Feelisch. 2023. “Uncoupled Redox Stress: How a Temporal Misalignment of Redox-Regulated Processes and Circadian Rhythmicity Exacerbates the Stressed State.” Open Biology 13 (9): 230151. https://doi.org/10.1098/rsob.230151.

Gelot, Camille, Marton Tibor Kovacs, Simona Miron, Emilie Mylne, Alexis Haan, Liza Boeffard-Dosierre, Rania Ghouil, et al. 2023. “Polθ Is Phosphorylated by PLK1 to Repair Double-Strand Breaks in Mitosis.” Nature, September. https://doi.org/10.1038/s41586-023-06506-6.