Biochemistry, Biophysics and Structural Biology Department

Publications

0
Publications in 2021
Andreani, Jessica, Masahito Ohue, and Brian Jiménez-García. 2022. “Editorial: Web Tools for Modeling and Analysis of Biomolecular Interactions.” Frontiers in Molecular Biosciences 9 (April). https://www.frontiersin.org/article/10.3389/fmolb.2022.875859.
Baudry, Kevin, Félix Barbut, Séverine Domenichini, Damien Guillaumot, Mai Pham Thy, Hélène Vanacker, Wojciech Majeran, Anja Krieger-Liszkay, Emmanuelle Issakidis-Bourguet, and Claire Lurin. 2022. “Adenylates Regulate Arabidopsis Plastidial Thioredoxin Activities through the Binding of a CBS Domain Protein.” Plant Physiology, June, kiac199. https://doi.org/10.1093/plphys/kiac199.
Blanc-Garin, Victoire, Théo Veaudor, Pierre Sétif, Brigitte Gontero, Stéphane D. Lemaire, Franck Chauvat, and Corinne Cassier-Chauvat. 2022. “First in Vivo Analysis of the Regulatory Protein CP12 of the Model Cyanobacterium Synechocystis PCC 6803: Biotechnological Implications.” Frontiers in Plant Science 13. https://www.frontiersin.org/articles/10.3389/fpls.2022.999672.
Bohn, Antoine, Katell Sénéchal-David, Jean-Noël Rebilly, Christian Herrero, Winfried Leibl, Elodie Anxolabéhère-Mallart, and Frederic Banse. 2022. “Heterolytic O-O Bond Cleavage Upon Single Electron Transfer to a Nonheme Fe(III)-OOH Complex.” Chemistry – A European Journal n/a (n/a). https://doi.org/10.1002/chem.202201600.
Boussac, Alain, Miwa Sugiura, and Julien Sellés. 2022. “Probing the Proton Release by Photosystem II in the S1 to S2 High-Spin Transition.” Biochimica et Biophysica Acta (BBA) - Bioenergetics 1863 (5): 148546. https://doi.org/10.1016/j.bbabio.2022.148546.
Brettel, Klaus, Pavel Müller, and Junpei Yamamoto. 2022. “Kinetics of Electron Returns in Successive Two-Photon DNA Repair by (6-4) Photolyase.” ACS Catalysis 12 (5): 3041–45. https://doi.org/10.1021/acscatal.2c00492.
Campanacci, Valérie, Agathe Urvoas, Liza Ammar Khodja, Magali Aumont-Nicaise, Magali Noiray, Sylvie Lachkar, Patrick A. Curmi, Philippe Minard, and Benoît Gigant. 2022. “Structural Convergence for Tubulin Binding of CPAP and Vinca Domain Microtubule Inhibitors.” Proceedings of the National Academy of Sciences 119 (19): e2120098119. https://doi.org/10.1073/pnas.2120098119.
Cargemel, Claire, Hélène Walbott, Dominique Durand, Pierre Legrand, Malika Ouldali, Jean-Luc Ferat, Stéphanie Marsin, and Sophie Quevillon-Cheruel. 2022. “The Apo-Form of the Vibrio Cholerae Replicative Helicase DnaB Is a Labile and Inactive Planar Trimer of Dimers.” FEBS Letters n/a (n/a). https://doi.org/10.1002/1873-3468.14403.
Cartwright, Tyrell N., Rebecca J. Harris, Stephanie K. Meyer, Aye M. Mon, Nikolaus A. Watson, Cheryl Tan, Agathe Marcelot, et al. 2022. “Dissecting the Roles of Haspin and VRK1 in Histone H3 Phosphorylation during Mitosis.” Scientific Reports 12 (1): 11210. https://doi.org/10.1038/s41598-022-15339-8.
Charbonnier, Jean Baptiste. 2022. “Tandem Regulation of MutS Activity by ATP and DNA during MMR Initiation.” Nature Structural & Molecular Biology, January, 1–3. https://doi.org/10.1038/s41594-021-00713-3.
Damke, Prashant P., Louisa Celma, Sumedha M. Kondekar, Anne Marie Di Guilmi, Stéphanie Marsin, Jordane Dépagne, Xavier Veaute, et al. 2022. “ComFC Mediates Transport and Handling of Single-Stranded DNA during Natural Transformation.” Nature Communications 13 (1): 1961. https://doi.org/10.1038/s41467-022-29494-z.
Dieudonné, Thibaud, Sara Abad Herrera, Michelle Juknaviciute Laursen, Maylis Lejeune, Charlott Stock, Kahina Slimani, Christine Jaxel, et al. 2022. “Autoinhibition and Regulation by Phosphoinositides of ATP8B1, a Human Lipid Flippase Associated with Intrahepatic Cholestatic Disorders.” Edited by Merritt Maduke. ELife 11 (April): e75272. https://doi.org/10.7554/eLife.75272.
Feelisch, Martin, Miriam M. Cortese-Krott, Jérôme Santolini, Stephen A. Wootton, and Alan A. Jackson. 2022. “Systems Redox Biology in Health and Disease.” EXCLI Journal 21 (March): 623–46. https://doi.org/10.17179/excli2022-4793.
Flourieusse, A., P. Bourgeois, E. Schenckbecher, J. Palvair, D. Legrand, C. Labbé, T. Bescond, et al. 2022. “Formation of Intracellular Vesicles within the Gram+ Lactococcus Lactis Induced by the Overexpression of Caveolin-1β.” Microbial Cell Factories 21 (1): 239. https://doi.org/10.1186/s12934-022-01944-9.
Gobet, Alexia, Christine Jaxel, Sandrine Magnard, Manuel Garrigos, Stéphane Orlowski, Nadège Jamin, Pierre Falson, and Vincent Chaptal. 2022. “Overexpression of the ABC Transporter BmrA Within Intracellular Caveolae in Escherichia Coli.” In Heterologous Expression of Membrane Proteins: Methods and Protocols, edited by Isabelle Mus-Veteau, 79–89. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2368-8_5.
Gotico, Philipp, Christian Herrero, Stefano Protti, Annamaria Quaranta, Sujitraj Sheth, Reza Fallahpour, Rajaa Farran, et al. 2022. “Proton-Controlled Action of an Imidazole as Electron Relay in a Photoredox Triad.” Photochemical & Photobiological Sciences, January. https://doi.org/10.1007/s43630-021-00163-2.
Gout, Jérôme, Floriane Meuris, Alain Desbois, and Pierre Dorlet. 2022. “In Vitro Coordination of Fe-Protoheme with Amyloid β Is Non-Specific and Exhibits Multiple Equilibria.” Journal of Inorganic Biochemistry 227 (February): 111664. https://doi.org/10.1016/j.jinorgbio.2021.111664.
Hatem, Elie, Nadine El Banna, Amélie Heneman-Masurel, Dorothée Baïlle, Laurence Vernis, Sylvie Riquier, Marie-Pierre Golinelli-Cohen, et al. 2022. “Novel Insights into Redox-Based Mechanisms for Auranofin-Induced Rapid Cancer Cell Death.” Cancers 14 (19): 4864. https://doi.org/10.3390/cancers14194864.
Hosokawa, Yuhei, Pavel Müller, Hirotaka Kitoh-Nishioka, Shigenori Iwai, and Junpei Yamamoto. 2022. “Limited Solvation of an Electron Donating Tryptophan Stabilizes a Photoinduced Charge-Separated State in Plant (6–4) Photolyase.” Scientific Reports 12 (1): 5084. https://doi.org/10.1038/s41598-022-08928-0.
Janssen, Anne, Agathe Marcelot, Sophia Breusegem, Pierre Legrand, Sophie Zinn-Justin, and Delphine Larrieu. 2022. “The BAF A12T Mutation Disrupts Lamin A/C Interaction, Impairing Robust Repair of Nuclear Envelope Ruptures in Nestor–Guillermo Progeria Syndrome Cells.” Nucleic Acids Research, August, gkac726. https://doi.org/10.1093/nar/gkac726.
Kanellopoulos, Jean M., and David M. Ojcius. 2022. “The Ins and Outs of T Cell Signaling.” Biomedical Journal, April. https://doi.org/10.1016/j.bj.2022.04.002.
Kim Tiam, Sandra, Katia Comte, Caroline Dalle, Marine Delagrange, Chakib Djediat, Bertrand Ducos, Charlotte Duval, et al. 2022. “The Success of the Bloom-Forming Cyanobacteria Planktothrix: Genotypes Variability Supports Variable Responses to Light and Temperature Stress.” Harmful Algae 117 (August): 102285. https://doi.org/10.1016/j.hal.2022.102285.
Kissling, Vera M., Giordano Reginato, Eliana Bianco, Kristina Kasaciunaite, Janny Tilma, Gea Cereghetti, Natalie Schindler, et al. 2022. “Mre11-Rad50 Oligomerization Promotes DNA Double-Strand Break Repair.” Nature Communications 13 (1): 2374. https://doi.org/10.1038/s41467-022-29841-0.
Krieger-Liszkay, Anja, and Ginga Shimakawa. 2022. “Regulation of the Generation of Reactive Oxygen Species during Photosynthetic Electron Transport.” Biochemical Society Transactions, April, BST20211246. https://doi.org/10.1042/BST20211246.
Laroche, Adrien, Maria Lucia Orsini Delgado, Benjamin Chalopin, Philippe Cuniasse, Steven Dubois, Raphaël Sierocki, Fabrice Gallais, et al. 2022. “Deep Mutational Engineering of Broadly-Neutralizing Nanobodies Accommodating SARS-CoV-1 and 2 Antigenic Drift.” MAbs 14 (1): 2076775. https://doi.org/10.1080/19420862.2022.2076775.
Lauressergues, Dominique, Mélanie Ormancey, Bruno Guillotin, Hélène San Clemente, Laurent Camborde, Carine Duboé, Sabine Tourneur, et al. 2022. “Characterization of Plant MicroRNA-Encoded Peptides (MiPEPs) Reveals Molecular Mechanisms from the Translation to Activity and Specificity.” Cell Reports 38 (6). https://doi.org/10.1016/j.celrep.2022.110339.
Lazar, Noureddine, Carl H. Mesarich, Yohann Petit-Houdenot, Nacera Talbi, Ines Li de la Sierra-Gallay, Emilie Zélie, Karine Blondeau, et al. 2022. “A New Family of Structurally Conserved Fungal Effectors Displays Epistatic Interactions with Plant Resistance Proteins.” PLOS Pathogens 18 (7): e1010664. https://doi.org/10.1371/journal.ppat.1010664.
Léger, Corentin, Irène Pitard, Mirko Sadi, Nicolas Carvalho, Sébastien Brier, Ariel Mechaly, Dorothée Raoux-Barbot, et al. 2022. “Dynamics and Structural Changes of Calmodulin upon Interaction with the Antagonist Calmidazolium.” BMC Biology 20 (1): 176. https://doi.org/10.1186/s12915-022-01381-5.
Llansola-Portoles, Manuel J., Andrew A. Pascal, and Bruno Robert. 2022. “Chapter Four - Resonance Raman: A Powerful Tool to Interrogate Carotenoids in Biological Matrices.” In Methods in Enzymology, edited by Eleanore T. Wurtzel, 674:113–35. Carotenoids: Biological Functions of Carotenoids and Apocarotenoids in Natural and Artificial Systems. Academic Press. https://doi.org/10.1016/bs.mie.2022.03.068.
López-Martín, Mario, Pedro Renault, Jesus Giraldo, José Luis Vázquez-Ibar, and Alex Perálvarez-Marín. 2022. “In Silico Assessment of the Lipid Fingerprint Signature of ATP2, the Essential P4-ATPase of Malaria Parasites.” Membranes 12 (7): 702. https://doi.org/10.3390/membranes12070702.
Macernis, Mindaugas, Simona Streckaite, Radek Litvin, Andrew A. Pascal, Manuel J. Llansola-Portoles, Bruno Robert, and Leonas Valkunas. 2022. “Electronic and Vibrational Properties of Allene Carotenoids.” The Journal of Physical Chemistry A, February. https://doi.org/10.1021/acs.jpca.1c09393.
Mao, Wei, Noureddine Lazar, Herman van Tilbeurgh, Philippe M. Loiseau, and Sébastien Pomel. 2022. “Minor Impact of A258D Mutation on Biochemical and Enzymatic Properties of Leishmania Infantum GDP-Mannose Pyrophosphorylase.” Microorganisms 10 (2): 231. https://doi.org/10.3390/microorganisms10020231.
Marcelot, Agathe, Sophie Zinn-Justin, and Philippe Cuniasse. 2022. “The Conformation of the Intrinsically Disordered N-Terminal Region of Barrier-to-Autointegration Factor (BAF) Is Regulated by PH and Phosphorylation.” Journal of Molecular Biology, November, 167888. https://doi.org/10.1016/j.jmb.2022.167888.
Mellouk, Amine, Tom Hutteau-Hamel, Julie Legrand, Hanaa Safya, Mohcine Benbijja, Françoise Mercier-Nomé, Karim Benihoud, Jean M. Kanellopoulos, and Pierre Bobé. 2022. “P2X7 Purinergic Receptor Plays a Critical Role in Maintaining T-Cell Homeostasis and Preventing Lupus Pathogenesis.” Frontiers in Immunology 13 (September). https://www.frontiersin.org/articles/10.3389/fimmu.2022.957008.
Miele, Solange, James Iain Provan, Justine Vergne, Christophe Possoz, Françoise Ochsenbein, and François-Xavier Barre. 2022. “The Xer Activation Factor of TLCΦ Expands the Possibilities for Xer Recombination.” Nucleic Acids Research, June, gkac429. https://doi.org/10.1093/nar/gkac429.
Mikalčiūtė, Austėja, Andrius Gelzinis, Mindaugas Mačernis, Claudia Büchel, Bruno Robert, Leonas Valkunas, and Jevgenij Chmeliov. 2022. “Structure-Based Model of Fucoxanthin–Chlorophyll Protein Complex: Calculations of Chlorophyll Electronic Couplings.” The Journal of Chemical Physics 156 (23): 234101. https://doi.org/10.1063/5.0092154.
Miller, Neil T., Ghada Ajlani, and Robert L. Burnap. 2022. “Cyclic Electron Flow-Coupled Proton Pumping in Synechocystis Sp. PCC6803 Is Dependent upon NADPH Oxidation by the Soluble Isoform of Ferredoxin:NADP-Oxidoreductase.” Microorganisms 10 (5): 855. https://doi.org/10.3390/microorganisms10050855.
Niziński, Stanisław, Adjéle Wilson, Lucas M. Uriarte, Cyril Ruckebusch, Elena A. Andreeva, Ilme Schlichting, Jacques-Philippe Colletier, Diana Kirilovsky, Gotard Burdzinski, and Michel Sliwa. 2022. “Unifying Perspective of the Ultrafast Photodynamics of Orange Carotenoid Proteins from Synechocystis: Peril of High-Power Excitation, Existence of Different S* States, and Influence of Tagging.” JACS Au 2 (5): 1084–95. https://doi.org/10.1021/jacsau.1c00472.
Niziński, Stanisław, Ilme Schlichting, Jacques-Philippe Colletier, Diana Kirilovsky, Gotard Burdzinski, and Michel Sliwa. 2022. “Is Orange Carotenoid Protein Photoactivation a Single-Photon Process?” Biophysical Reports 2 (3): 100072. https://doi.org/10.1016/j.bpr.2022.100072.
Onésime, Djamila, Léa Vidal, Stéphane Thomas, Céline Henry, Véronique Martin, Gwenaëlle André, Piotr Kubiak, Philippe Minard, Ewelina Celinska, and Jean-Marc Nicaud. 2022. “A Unique, Newly Discovered Four-Member Protein Family Involved in Extracellular Fatty Acid Binding in Yarrowia Lipolytica.” Microbial Cell Factories 21 (1): 200. https://doi.org/10.1186/s12934-022-01925-y.
Pérez, Javier, Aurélien Thureau, and Patrice Vachette. 2022. “Chapter Seven - SEC-SAXS: Experimental Set-up and Software Developments Build up a Powerful Tool.” In Methods in Enzymology, edited by John A. Tainer, 677:221–49. Small Angle Scattering Part A: Methods for Structural Investigation. Academic Press. https://doi.org/10.1016/bs.mie.2022.08.024.
Pernier, Julien, and Kristine Schauer. 2022. “Does the Actin Network Architecture Leverage Myosin-I Functions?” Biology 11 (7): 989. https://doi.org/10.3390/biology11070989.
Perrot, Nahuel, Delphine Dessaux, Anthony Rignani, Cynthia Gillet, Stéphane Orlowski, Nadège Jamin, Manuel Garrigos, and Christine Jaxel. 2022. “Caveolin-1β Promotes the Production of Active Human Microsomal Glutathione S-Transferase in Induced Intracellular Vesicles in Spodoptera Frugiperda 21 Insect Cells.” Biochimica et Biophysica Acta (BBA) - Biomembranes 1864 (8): 183922. https://doi.org/10.1016/j.bbamem.2022.183922.
Pieri, Laura, Fengbin Wang, Ana-Andreea Arteni, Matthijn Vos, Jean-Marie Winter, Marie-Hélène Le Du, Franck Artzner, et al. 2022. “Atomic Structure of Lanreotide Nanotubes Revealed by Cryo-EM.” Proceedings of the National Academy of Sciences 119 (4). https://doi.org/10.1073/pnas.2120346119.
Prakash, Rohit, Yashpal Rawal, Meghan R. Sullivan, McKenzie K. Grundy, Hélène Bret, Michael J. Mihalevic, Hayley L. Rein, et al. 2022. “Homologous Recombination–Deficient Mutation Cluster in Tumor Suppressor RAD51C Identified by Comprehensive Analysis of Cancer Variants.” Proceedings of the National Academy of Sciences 119 (38): e2202727119. https://doi.org/10.1073/pnas.2202727119.
Pugliese, Eva, Philipp Gotico, Iris Wehrung, Bernard Boitrel, Annamaria Quaranta, Minh-Huong Ha-Thi, Thomas Pino, et al. 2022. “Dissection of Light-Induced Charge Accumulation at a Highly Active Iron Porphyrin: Insights in the Photocatalytic CO2 Reduction.” Angewandte Chemie (International Ed. in English), January, e202117530. https://doi.org/10.1002/anie.202117530.
Pugliese, Eva, Nhat Tam Vo, Alain Boussac, Frédéric Banse, Yasmina Mekmouche, Jalila Simaan, Thierry Tron, et al. 2022. “Photocatalytic Generation of a Non-Heme Fe(III)-Hydroperoxo Species with O2 in Water for the Oxygen Atom Transfer Reaction.” Chemical Science 13 (42): 12332–39. https://doi.org/10.1039/D2SC03129A.
Qiu, Xue, Jingyue Xu, Marcelina Cardoso Dos Santos, and Niko Hildebrandt. 2022. “Multiplexed Biosensing and Bioimaging Using Lanthanide-Based Time-Gated Förster Resonance Energy Transfer.” Accounts of Chemical Research, January. https://doi.org/10.1021/acs.accounts.1c00691.
Rietmeyer, Lauriane, Inès Li De La Sierra-Gallay, Guy Schepers, Delphine Dorchêne, Laura Iannazzo, Delphine Patin, Thierry Touzé, et al. 2022. “Amino-Acyl TXNA as Inhibitors or Amino Acid Donors in Peptide Synthesis.” Nucleic Acids Research, November, gkac1023. https://doi.org/10.1093/nar/gkac1023.
Soisig Steunou, Anne, Armelle Vigouroux, Magali Aumont-Nicaise, Stéphane Plancqueel, Alain Boussac, Soufian Ouchane, and Solange Moréra. 2022. “New Insights into the Mechanism of Iron Transport through the Bacterial Ftr-System Present in Pathogens.” The FEBS Journal n/a (n/a). https://doi.org/10.1111/febs.16476.
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