Genome Biology Department

Publications

Publications in 2023
0
2020 - 2023
2015 - 2019
Abbondanzieri, E. A., A. B. Badrinarayanan, D. Barillà, S. D. Bell, F. Blombach, J. Y. Bouet, S. Bulgheresi, et al. 2025. “Future Directions of the Prokaryotic Chromosome Field.” Molecular Microbiology 123 (2): 89–100. https://doi.org/10.1111/mmi.15347.
Bertrand, Lisa, Annika Nelde, Bertha Cecilia Ramirez, Isabelle Hatin, Hugo Arbes, Pauline François, Stéphane Demais, et al. 2025. “Unveiling Conserved HIV-1 Open Reading Frames Encoding T Cell Antigens Using Ribosome Profiling.” Nature Communications 16 (1): 1707. https://doi.org/10.1038/s41467-025-56773-2.
Bertrand, Lisa, Annika Nelde, Bertha Cecilia Ramirez, Isabelle Hatin, Hugo Arbes, Pauline François, Stéphane Demais, et al. 2025. “Author Correction: Unveiling Conserved HIV-1 Open Reading Frames Encoding T Cell Antigens Using Ribosome Profiling.” Nature Communications 16 (1): 2243. https://doi.org/10.1038/s41467-025-57621-z.
Charmant, Olivia, Julita Gruchota, Olivier Arnaiz, Katarzyna P Nowak, Nicolas Moisan, Coralie Zangarelli, Mireille Bétermier, et al. 2025. “The PIWI-Interacting Protein Gtsf1 Controls the Selective Degradation of Small RNAs in Paramecium.” Nucleic Acids Research 53 (1): gkae1055. https://doi.org/10.1093/nar/gkae1055.
Ciardo, Diletta, Olivier Haccard, Francesco de Carli, Olivier Hyrien, Arach Goldar, and Kathrin Marheineke. 2025. “Dual DNA Replication Modes: Varying Fork Speeds and Initiation Rates within the Spatial Replication Program in Xenopus.” Nucleic Acids Research 53 (3): gkaf007. https://doi.org/10.1093/nar/gkaf007.
Cossu, Carlo Andrea, Giuliano Garofolo, Anna Janowicz, Fabrizio De Massis, Jeanette Wentzel, Maphuti Betty Ledwaba, Claude Sabeta, et al. 2025. “Phylogenomics of Brucella Abortus Isolated from African Buffalo in Kruger National Park: New Perspectives on Wildlife-Cattle Disease Dynamics.” Veterinary Microbiology 304 (March):110493. https://doi.org/10.1016/j.vetmic.2025.110493.
Fabret, Céline, Emmanuel Giudice, Sophie Chat, Reynald Gillet, and Olivier Namy. 2025. “RQC2 Is a Major Player in Peptide Release from Stalled Ribosomes.” Structure (London, England: 1993), March, S0969-2126(25)00105-4. https://doi.org/10.1016/j.str.2025.03.008.
Grognet, Pierre, Robert Debuchy, and Tatiana Giraud. 2025. “Genetic Differentiation in the MAT-Proximal Region Is Not Sufficient for Suppressing Recombination in Podospora Anserina.” G3 (Bethesda, Md.), January, jkaf015. https://doi.org/10.1093/g3journal/jkaf015.
Ha, Kam Pou, Etornam Kofi Kumeko, and Philippe Bouloc. 2025. “A Small Regulatory RNA Controls Antibiotic Adaptation in Staphylococcus Aureus by Modulating Efflux Pump Expression.” Antimicrobial Agents and Chemotherapy, April, e0117624. https://doi.org/10.1128/aac.01176-24.
Hure, Valentin, Florence Piron-Prunier, Tamara Yehouessi, Clémentine Vitte, Aleksandra E. Kornienko, Gabrielle Adam, Magnus Nordborg, and Angélique Déléris. 2025. “Alternative Silencing States of Transposable Elements in Arabidopsis Associated with H3K27me3.” Genome Biology 26 (1): 11. https://doi.org/10.1186/s13059-024-03466-6.
Labaronne, Emmanuel, Didier Décimo, Lisa Bertrand, Laura Guiguettaz, Thibault J. M. Sohier, David Cluet, Valérie Vivet-Boudou, et al. 2025. “Non-AUG HIV-1 UORF Translation Elicits Specific T Cell Immune Response and Regulates Viral Transcript Expression.” Nature Communications 16 (1): 1706. https://doi.org/10.1038/s41467-025-56772-3.
Le Berre, Marine, Thibault Tubiana, Philippa Reuterswärd Waldner, Noureddine Lazar, Ines Li de la Sierra-Gallay, Joana M. Santos, Manuel Llinás, and Sylvie Nessler. 2025. “Structural Characterization of the ACDC Domain from ApiAP2 Proteins, a Potential Molecular Target against Apicomplexan Parasites.” Acta Crystallographica. Section D, Structural Biology 81 (Pt 1): 38–48. https://doi.org/10.1107/S2059798324012518.
Leroy, Estelle, Drice Challal, Stéphane Pelletier, Coralie Goncalves, Alexandra Menant, Virginie Marchand, Yan Jaszczyszyn, et al. 2025. “A Bifunctional SnoRNA with Separable Activities in Guiding RRNA 2’-O-Methylation and Scaffolding Gametogenesis Effectors.” Nature Communications 16 (1): 3250. https://doi.org/10.1038/s41467-025-58664-y.
Loughran, Gary, Dmitry E. Andreev, Ilya M. Terenin, Olivier Namy, Martin Mikl, Martina M. Yordanova, C. Joel McManus, et al. 2025. “Guidelines for Minimal Reporting Requirements, Design and Interpretation of Experiments Involving the Use of Eukaryotic Dual Gene Expression Reporters (MINDR).” Nature Structural & Molecular Biology, March. https://doi.org/10.1038/s41594-025-01492-x.
Papale, Andrea, Julie Segueni, Hanae El Maroufi, Daan Noordermeer, and David Holcman. 2025. “Insulation between Adjacent TADs Is Controlled by the Width of Their Boundaries through Distinct Mechanisms.” Proceedings of the National Academy of Sciences of the United States of America 122 (11): e2413112122. https://doi.org/10.1073/pnas.2413112122.
Verron, Baptiste, Olivier Arnaiz, Coralie Zangarelli, Nathalie Mathy, Mireille Bétermier, and Julien Bischerour. 2025. “The Linker Region of a Development-Specific DNA Polymerase X Ensures Efficient Repair of Programmed DNA Double-Strand Breaks in Parameciumtetraurelia.” Nucleic Acids Research 53 (7): gkaf286. https://doi.org/10.1093/nar/gkaf286.
Andjus, Sara, Ugo Szachnowski, Nicolas Vogt, Stamatia Gioftsidi, Isabelle Hatin, David Cornu, Chris Papadopoulos, et al. 2024. “Pervasive Translation of Xrn1-Sensitive Unstable Long Noncoding RNAs in Yeast.” RNA (New York, N.Y.) 30 (6): 662–79. https://doi.org/10.1261/rna.079903.123.
Barrault, Maxime, Elise Leclair, Etornam Kofi Kumeko, Eric Jacquet, and Philippe Bouloc. 2024. “Staphylococcal SRNA IsrR Downregulates Methylthiotransferase MiaB under Iron-Deficient Conditions.” Microbiology Spectrum, August, e0388823. https://doi.org/10.1128/spectrum.03888-23.
Barrault, Maxime, Svetlana Chabelskaya, Rodrigo H Coronel-Tellez, Claire Toffano-Nioche, Eric Jacquet, and Philippe Bouloc. 2024. “Staphylococcal Aconitase Expression during Iron Deficiency Is Controlled by an SRNA-Driven Feedforward Loop and Moonlighting Activity.” Nucleic Acids Research 52 (14): 8241–53. https://doi.org/10.1093/nar/gkae506.
Besombes, Amelie, Yazid Adam, Christophe Possoz, Ivan Junier, Francois-Xavier Barre, and Jean-Luc Ferat. 2024. “DciA Secures Bidirectional Replication Initiation in Vibrio Cholerae.” Nucleic Acids Research, September, gkae795. https://doi.org/10.1093/nar/gkae795.
Bessière, Chloé, Haoliang Xue, Benoit Guibert, Anthony Boureux, Florence Rufflé, Julien Viot, Rayan Chikhi, et al. 2024. “Transipedia.Org: K-Mer-Based Exploration of Large RNA Sequencing Datasets and Application to Cancer Data.” Genome Biology 25 (1): 266. https://doi.org/10.1186/s13059-024-03413-5.
Bischerour, Julien, Olivier Arnaiz, Coralie Zangarelli, Vinciane Régnier, Florence Iehl, Virginie Ropars, Jean-Baptiste Charbonnier, and Mireille Bétermier. 2024. “Uncoupling Programmed DNA Cleavage and Repair Scrambles the Paramecium Somatic Genome.” Cell Reports 43 (4). https://doi.org/10.1016/j.celrep.2024.114001.
Buggiani, Julia, Thierry Meinnel, Carmela Giglione, and Frédéric Frottin. 2024. “Advances in Nuclear Proteostasis of Metazoans.” Biochimie, April, S0300-9084(24)00081-6. https://doi.org/10.1016/j.biochi.2024.04.006.
C, El Amri, Giglione C, and Lalmanach G. 2024. “A Yummy Blend of Homeostasis and Proteolytic Mechanisms.” Biochimie, October. https://doi.org/10.1016/j.biochi.2024.10.005.
Campese, Lucia, Luca Russo, Maria Abagnale, Adriana Alberti, Giancarlo Bachi, Cecilia Balestra, Daniele Bellardini, et al. 2024. “The NEREA Augmented Observatory: An Integrative Approach to Marine Coastal Ecology.” Scientific Data 11 (1): 989. https://doi.org/10.1038/s41597-024-03787-y.
Ceppi, Ilaria, Maria Rosaria Dello Stritto, Martin Mütze, Stefan Braunshier, Valentina Mengoli, Giordano Reginato, Hồ Mỹ Phúc Võ, et al. 2024. “Mechanism of BRCA1–BARD1 Function in DNA End Resection and DNA Protection.” Nature 634 (8033): 492–500. https://doi.org/10.1038/s41586-024-07909-9.
Chang, Li-Hsin, and Daan Noordermeer. 2024. “Permeable TAD Boundaries and Their Impact on Genome-Associated Functions.” BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, August, e2400137. https://doi.org/10.1002/bies.202400137.
Coux, Olivier, Rosa Farràs, and Core Group of ProteoCure. 2024. “ProteoCure : An European Network to Fine-Tune the Proteome.” Biochimie, June, S0300-9084(24)00140-8. https://doi.org/10.1016/j.biochi.2024.06.004.
Delaleau, Mildred, Nara Figueroa-Bossi, Thuy Duong Do, Patricia Kerboriou, Eric Eveno, Lionello Bossi, and Marc Boudvillain. 2024. “Rho-Dependent Transcriptional Switches Regulate the Bacterial Response to Cold Shock.” Molecular Cell, August, S1097-2765(24)00632-4. https://doi.org/10.1016/j.molcel.2024.07.034.
Dubois, Emeline, Stéphanie Boisnard, Henri-Marc Bourbon, Kenza Yefsah, Karine Budin, Robert Debuchy, Liangran Zhang, Nancy Kleckner, Denise Zickler, and Eric Espagne. 2024. “Canonical and Noncanonical Roles of Hop1 Are Crucial for Meiotic Prophase in the Fungus Sordaria Macrospora.” PLoS Biology 22 (7): e3002705. https://doi.org/10.1371/journal.pbio.3002705.
Emmenecker, Côme, Simine Pakzad, Fatou Ture, Julie Guerin, Aurélie Hurel, Aurélie Chambon, Chloé Girard, Raphael Mercier, and Rajeev Kumar. 2024. “FIGL1 Attenuates Meiotic Interhomolog Repair and Is Counteracted by the RAD51 Paralog XRCC2 and the Chromosome Axis Protein ASY1 during Meiosis.” The New Phytologist, October. https://doi.org/10.1111/nph.20181.
Espinosa, Elena, Jihane Challita, Jean-Michel Desfontaines, Christophe Possoz, Marie-Eve Val, Didier Mazel, Martial Marbouty, Romain Koszul, Elisa Galli, and François-Xavier Barre. 2024. “MatP Local Enrichment Delays Segregation Independently of Tetramer Formation and Septal Anchoring in Vibrio Cholerae.” Nature Communications 15 (1): 9893. https://doi.org/10.1038/s41467-024-54195-0.
Essoh, Christiane, Yolande Hauck, Timothée Ouassa, Daouda Touré, Richmond Djatchi, Guillaume Yao Loukou, Simon-Pierre Assanvo N’Guetta, Gilles Vergnaud, and Christine Pourcel. 2024. “Molecular Typing of Pseudomonas Aeruginosa Isolates Collected in Abidjan Hospitals (Côte d’Ivoire) Using the Multiple-Locus Variable Number of Tandem Repeats Method.” Diagnostics (Basel, Switzerland) 14 (20): 2284. https://doi.org/10.3390/diagnostics14202284.
Farhadova, Sabina, Amani Ghousein, François Charon, Caroline Surcis, Melisa Gomez-Velazques, Clara Roidor, Flavio Di Michele, et al. 2024. “The Long Non-Coding RNA Meg3 Mediates Imprinted Gene Expression during Stem Cell Differentiation.” Nucleic Acids Research, April, gkae247. https://doi.org/10.1093/nar/gkae247.
Figueroa-Bossi, Nara, Rocío Fernández-Fernández, Patricia Kerboriou, Philippe Bouloc, Josep Casadesús, María Antonia Sánchez-Romero, and Lionello Bossi. 2024. “Transcription-Driven DNA Supercoiling Counteracts H-NS-Mediated Gene Silencing in Bacterial Chromatin.” Nature Communications 15 (1): 2787. https://doi.org/10.1038/s41467-024-47114-w.
Ghorbani, Fatemeh, Eddy N. de Boer, Michiel R. Fokkens, Jelkje de Boer-Bergsma, Corien C. Verschuuren-Bemelmans, Elles Wierenga, Hamidreza Kasaei, et al. 2024. “Identification and Copy Number Variant Analysis of Enhancer Regions of Genes Causing Spinocerebellar Ataxia.” International Journal of Molecular Sciences 25 (20): 11205. https://doi.org/10.3390/ijms252011205.
Guedes, Joana P., Jean Baptiste Boyer, Jasmine Elurbide, Beatriz Carte, Virginie Redeker, Laila Sago, Thierry Meinnel, Manuela Côrte-Real, Carmela Giglione, and Rafael Aldabe. 2024. “NatB Protects Procaspase-8 from UBR4-Mediated Degradation and Is Required for Full Induction of the Extrinsic Apoptosis Pathway.” Molecular and Cellular Biology 44 (9): 358–71. https://doi.org/10.1080/10985549.2024.2382453.
Gutiérrez-Santiago, Francisco, Verónica Martínez-Fernández, Ana Isabel Garrido-Godino, Cristina Colino-Palomino, Andrés Clemente-Blanco, Christine Conesa, Joël Acker, and Francisco Navarro. 2024. “Maf1 Phosphorylation Is Regulated through the Action of Prefoldin-like Bud27 on PP4 Phosphatase in Saccharomyces Cerevisiae.” Nucleic Acids Research, May, gkae414. https://doi.org/10.1093/nar/gkae414.
Haas, Drago, Matthieu Barba, Cláudia M Vicente, Šarká Nezbedová, Amélie Garénaux, Stéphanie Bury-Moné, Jean-Noël Lorenzi, et al. 2024. “Synteruptor: Mining Genomic Islands for Non-Classical Specialized Metabolite Gene Clusters.” NAR Genomics and Bioinformatics 6 (2): lqae069. https://doi.org/10.1093/nargab/lqae069.
Jaffal, Hoda, Mounia Kortebi, Pauline Misson, Paulo Tavares, Malika Ouldali, Hervé Leh, Sylvie Lautru, Virginia S. Lioy, François Lecointe, and Stéphanie G. Bury-Moné. 2024. “Prophage Induction Can Facilitate the in Vitro Dispersal of Multicellular Streptomyces Structures.” PLOS Biology 22 (7): e3002725. https://doi.org/10.1371/journal.pbio.3002725.
Jones, Gareth, Nancy Kleckner, and Denise Zickler. 2024. “Meiosis through Three Centuries.” Chromosoma, May. https://doi.org/10.1007/s00412-024-00822-0.
Kadyrova, Madina, Alexandr Ostrovskii, Kassym Mukanov, Amirkhan Kassen, Elena Shevtsova, Maxat Berdikulov, Gilles Vergnaud, and Alexandr Shevtsov. 2024. “Molecular Characterization of Anaplasma Spp. in Cattle from Kazakhstan.” Pathogens (Basel, Switzerland) 13 (10): 894. https://doi.org/10.3390/pathogens13100894.
Karri, Sabrina, David Cornu, Claudia Serot, Lynda Biri, Aurélie Hatton, Elise Dréanot, Camille Rullaud, et al. 2024. “TLN468 Changes the Pattern of TRNA Used to Read through Premature Termination Codons in CFTR.” Journal of Cystic Fibrosis: Official Journal of the European Cystic Fibrosis Society 23 (6): 1185–94. https://doi.org/10.1016/j.jcf.2024.07.017.
Kreis, Victor, Claire Toffano-Nioche, Cécile Denève-Larrazet, Jean-Christophe Marvaud, Julian R. Garneau, Florent Dumont, Erwin L. van Dijk, et al. 2024. “Dual RNA-Seq Study of the Dynamics of Coding and Non-Coding RNA Expression during Clostridioides Difficile Infection in a Mouse Model.” MSystems 9 (12): e00863-24. https://doi.org/10.1128/msystems.00863-24.
Leiba, Jade, Tamara Sipka, Christina Begon-Pescia, Matteo Bernardello, Sofiane Tairi, Lionello Bossi, Anne-Alicia Gonzalez, et al. 2024. “Dynamics of Macrophage Polarization Support Salmonella Persistence in a Whole Living Organism.” ELife 13 (January):e89828. https://doi.org/10.7554/eLife.89828.
Lekota, Kgaugelo Edward, Ayesha Hassim, Maphuti Betty Ledwaba, Barbara A. Glover, Edgar H. Dekker, Louis Ockert van Schalkwyk, Jennifer Rossouw, Wolfgang Beyer, Gilles Vergnaud, and Henriette van Heerden. 2024. “Bacillus Anthracis in South Africa, 1975-2013: Are Some Lineages Vanishing?” BMC Genomics 25 (1): 742. https://doi.org/10.1186/s12864-024-10631-5.
Maalouf, Christelle A., Adriana Alberti, and Julie Soutourina. 2024. “Mediator Complex in Transcription Regulation and DNA Repair: Relevance for Human Diseases.” DNA Repair 141 (June):103714. https://doi.org/10.1016/j.dnarep.2024.103714.
Moindrot, Benoit, Yui Imaizumi, and Robert Feil. 2024. “Differential 3D Genome Architecture and Imprinted Gene Expression: Cause or Consequence?” Biochemical Society Transactions, May, BST20230143. https://doi.org/10.1042/BST20230143.
Monteagudo-Sánchez, Ana, Daan Noordermeer, and Maxim V. C. Greenberg. 2024. “The Impact of DNA Methylation on CTCF-Mediated 3D Genome Organization.” Nature Structural & Molecular Biology 31 (3): 404–12. https://doi.org/10.1038/s41594-024-01241-6.
Monteagudo-Sánchez, Ana, Julien Richard Albert, Margherita Scarpa, Daan Noordermeer, and Maxim V. C. Greenberg. 2024. “The Impact of the Embryonic DNA Methylation Program on CTCF-Mediated Genome Regulation.” Nucleic Acids Research, August, gkae724. https://doi.org/10.1093/nar/gkae724.
Morin, Chloé, Agnès Baudin-Baillieu, Flora Nguyen Van Long, Caroline Isaac, Laure Bidou, Hugo Arbes, Pauline François, et al. 2024. “Intricate Ribosome Composition and Translational Reprogramming in Epithelial-Mesenchymal Transition.” Proceedings of the National Academy of Sciences of the United States of America 121 (50): e2408114121. https://doi.org/10.1073/pnas.2408114121.
Nocente, Marina C., Anida Mesihovic Karamitsos, Emilie Drouineau, Manon Soleil, Waad Albawardi, Cécile Dulary, Florence Ribierre, et al. 2024. “CBAF Generates Subnucleosomes That Expand OCT4 Binding and Function beyond DNA Motifs at Enhancers.” Nature Structural & Molecular Biology 31 (11): 1756–68. https://doi.org/10.1038/s41594-024-01344-0.
O, Saatci, Alam R, Huynh-Dam Kt, Isik A, Uner M, Belder N, Ersan Pg, et al. 2024. “Targeting LINC00152 Activates CAMP/Ca2+/Ferroptosis Axis and Overcomes Tamoxifen Resistance in ER+ Breast Cancer.” Cell Death & Disease 15 (6). https://doi.org/10.1038/s41419-024-06814-3.
Papadopoulos, Chris, Hugo Arbes, David Cornu, Nicolas Chevrollier, Sandra Blanchet, Paul Roginski, Camille Rabier, et al. 2024. “The Ribosome Profiling Landscape of Yeast Reveals a High Diversity in Pervasive Translation.” Genome Biology 25 (1): 268. https://doi.org/10.1186/s13059-024-03403-7.
Ponndara, Sokrich, Mounia Kortebi, Frédéric Boccard, Stéphanie Bury-Moné, and Virginia S. Lioy. 2024. “Principles of Bacterial Genome Organization, a Conformational Point of View.” Molecular Microbiology, June. https://doi.org/10.1111/mmi.15290.
Riemenschneider, Henrick, Qiang Guo, Jakob Bader, Frédéric Frottin, Daniel Farny, Gernot Kleinberger, Christian Haass, et al. 2024. “Author Correction: Gel-like Inclusions of C-Terminal Fragments of TDP-43 Sequester Stalled Proteasomes in Neurons.” EMBO Reports, June. https://doi.org/10.1038/s44319-024-00163-0.
Rivière, Frédéric, Cyril Dian, Rémi F. Dutheil, Paul Monassa, Carmela Giglione, and Thierry Meinnel. 2024. “Novel, Tightly Structurally Related N-Myristoyltransferase Inhibitors Display Equally Potent yet Distinct Inhibitory Mechanisms.” Structure (London, England: 1993), August, S0969-2126(24)00318-6. https://doi.org/10.1016/j.str.2024.08.001.
Roca Paixao, Joaquin Felipe, and Angélique Déléris. 2024. “Epigenetic Control of T-DNA during Transgenesis and Pathogenesis.” Plant Physiology, November, kiae583. https://doi.org/10.1093/plphys/kiae583.
Roginski, Paul, Anna Grandchamp, Chloé Quignot, and Anne Lopes. 2024. “De Novo Emerged Gene Search in Eukaryotes with DENSE.” Genome Biology and Evolution 16 (8): evae159. https://doi.org/10.1093/gbe/evae159.
Rossier, Ombeline, Cécile Labarre, Anne Lopes, Monique Auberdiac, Kevin Tambosco, Daniel Delaruelle, Hakima Abes, et al. 2024. “Genome Sequence of PSonyx, a Singleton Bacteriophage Infecting Corynebacterium Glutamicum.” Microbiology Resource Announcements 13 (2): e01155-23. https://doi.org/10.1128/mra.01155-23.
Schvartz, Marion, Florent Saudrais, Yves Boulard, Jean-Philippe Renault, Céline Henry, Stéphane Chédin, Serge Pin, and Jean-Christophe Aude. 2024. “Dual Fractions Proteomic Analysis of Silica Nanoparticle Interactions with Protein Extracts.” Materials (Basel, Switzerland) 17 (19): 4909. https://doi.org/10.3390/ma17194909.
Seba, Mohammed, Frederic Boccard, and Stéphane Duigou. 2024. “Activity of MukBEF for Chromosome Management in E. Coli and Its Inhibition by MatP.” ELife 12 (February):RP91185. https://doi.org/10.7554/eLife.91185.
Sebastià, C., M. Gallopin, Y. Ramayo-Caldas, J. Estellé, J. Valdés-Hernández, A. Castelló, A. Sánchez, D. Crespo-Piazuelo, and J. M. Folch. 2024. “Gene Co-Expression Network Analysis for Porcine Intramuscular Fatty Acid Composition.” Animal: An International Journal of Animal Bioscience 18 (9): 101259. https://doi.org/10.1016/j.animal.2024.101259.
Shevtsov, Alexandr, Uinkul Izbanova, Asylulan Amirgazin, Alma Kairzhanova, Ayan Dauletov, Vladimir Kiyan, and Gilles Vergnaud. 2024. “Genetic Homogeneity of Francisella Tularensis Subsp. Mediasiatica Strains in Kazakhstan.” Pathogens (Basel, Switzerland) 13 (7): 581. https://doi.org/10.3390/pathogens13070581.
Shevtsov, Alexandr, Ayan Dauletov, Uinkul Izbanova, Alma Kairzhanova, Nailya Tursunbay, Vladimir Kiyan, and Gilles Vergnaud. 2024. “Development of a Real-Time PCR Assay for the Detection of Francisella Spp. and the Identification of F. Tularensis Subsp. Mediasiatica.” Microorganisms 12 (11): 2345. https://doi.org/10.3390/microorganisms12112345.
Timofeev, Vitalii, Irina Bakhteeva, Galina Titareva, Raisa Mironova, Vera Evseeva, Tatiana Kravchenko, Angelika Sizova, et al. 2024. “Avirulence of a Spontaneous Francisella Tularensis Subsp. Mediasiatica PrmA Mutant.” PloS One 19 (6): e0305569. https://doi.org/10.1371/journal.pone.0305569.
Abd Al-Razaq, Mutaz A., Benjamin M. Freyter, Anna Isermann, Gargi Tewary, Adèle Mangelinck, Carl Mann, and Claudia E. Rübe. 2023. “Role of Histone Variant H2A.J in Fine-Tuning Chromatin Organization for the Establishment of Ionizing Radiation-Induced Senescence.” Cells 12 (6): 916. https://doi.org/10.3390/cells12060916.
Abdelli, Mehdi, Charlotte Falaise, Valérie Morineaux-Hilaire, Amélie Cumont, Laurent Taysse, Françoise Raynaud, and Vincent Ramisse. 2023. “Get to Know Your Neighbors: Characterization of Close Bacillus Anthracis Isolates and Toxin Profile Diversity in the Bacillus Cereus Group.” Microorganisms 11 (11): 2721. https://doi.org/10.3390/microorganisms11112721.
André, Kévin M., Nathalie Giordanengo Aiach, Veronica Martinez-Fernandez, Leo Zeitler, Adriana Alberti, Arach Goldar, Michel Werner, Cyril Denby Wilkes, and Julie Soutourina. 2023. “Functional Interplay between Mediator and RSC Chromatin Remodeling Complex Controls Nucleosome-Depleted Region Maintenance at Promoters.” Cell Reports 42 (5): 112465. https://doi.org/10.1016/j.celrep.2023.112465.
Arbona, Jean-Michel, Hadi Kabalane, Jeremy Barbier, Arach Goldar, Olivier Hyrien, and Benjamin Audit. 2023. “Neural Network and Kinetic Modelling of Human Genome Replication Reveal Replication Origin Locations and Strengths.” PLoS Computational Biology 19 (5): e1011138. https://doi.org/10.1371/journal.pcbi.1011138.
Arnesen, Thomas, Henriette Aksnes, and Carmela Giglione. 2023. “Protein Termini 2022: Central Roles of Protein Ends.” Trends in Biochemical Sciences, March, S0968-0004(23)00075-0. https://doi.org/10.1016/j.tibs.2023.02.008.
Arnould, Coline, Vincent Rocher, Florian Saur, Aldo S. Bader, Fernando Muzzopappa, Sarah Collins, Emma Lesage, et al. 2023. “Chromatin Compartmentalization Regulates the Response to DNA Damage.” Nature, October. https://doi.org/10.1038/s41586-023-06635-y.
Arnould, Coline, Vincent Rocher, Florian Saur, Aldo S. Bader, Fernando Muzzopappa, Sarah Collins, Emma Lesage, et al. 2023. “Author Correction: Chromatin Compartmentalization Regulates the Response to DNA Damage.” Nature, November. https://doi.org/10.1038/s41586-023-06841-8.
Balbontín, Roberto, Nara Figueroa-Bossi, and Lionello Bossi. 2023. “Construction of Single-Copy Fluorescent Protein Fusions by One-Step Recombineering.” Cold Spring Harbor Protocols, February. https://doi.org/10.1101/pdb.prot107950.
Balbontín, Roberto, Mathilde Ratel, Nara Figueroa-Bossi, and Lionello Bossi. 2023. “Converting an FRT-Tagged Gene into a Fluorescent Protein Gene Fusion by Flp-Mediated Site-Specific Recombination.” Cold Spring Harbor Protocols, February. https://doi.org/10.1101/pdb.prot107951.
Barone, M., Y. Ramayo-Caldas, J. Estellé, K. Tambosco, S. Chadi, F. Maillard, M. Gallopin, et al. 2023. “Gut Barrier-Microbiota Imbalances in Early Life Lead to Higher Sensitivity to Inflammation in a Murine Model of C-Section Delivery.” Microbiome 11 (1): 140. https://doi.org/10.1186/s40168-023-01584-0.
Bazin-Gélis, Mélanie, Evangelia Eleftheriou, Coralie Zangarelli, Gaëlle Lelandais, Linda Sperling, Olivier Arnaiz, and Mireille Bétermier. 2023. “Inter-Generational Nuclear Crosstalk Links the Control of Gene Expression to Programmed Genome Rearrangement during the Paramecium Sexual Cycle.” Nucleic Acids Research, November, gkad1006. https://doi.org/10.1093/nar/gkad1006.
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