Genome Biology Department

Publications

0
Publications in 2021
Adam, Yazid, Pierre Brezellec, Elena Espinosa, Amelie Besombes, Delphine Naquin, Evelyne Paly, Christophe Possoz, Erwin van Dijk, Barre Francois-Xavier, and Ferat Jean-Luc. 2022. “Plesiomonas Shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome.” Genome Biology and Evolution, January, evac011. https://doi.org/10.1093/gbe/evac011.
Altinoglu, Ipek, Guillaume Abriat, Alexis Carreaux, Lucía Torres-Sánchez, Mickaël Poidevin, Petya Violinova Krasteva, and Yoshiharu Yamaichi. 2022. “Analysis of HubP-Dependent Cell Pole Protein Targeting in Vibrio Cholerae Uncovers Novel Motility Regulators.” PLOS Genetics 18 (1): e1009991. https://doi.org/10.1371/journal.pgen.1009991.
Asensio, Thomas, Cyril Dian, Jean-Baptiste Boyer, Frédéric Rivière, Thierry Meinnel, and Carmela Giglione. 2022. “A Continuous Assay Set to Screen and Characterize Novel Protein N-Acetyltransferases Unveils Rice General Control Non-Repressible 5-Related N-Acetyltransferase2 Activity.” Frontiers in Plant Science 13 (March). https://www.frontiersin.org/article/10.3389/fpls.2022.832144.
Chua, Lingluo, Zheng Zhanga, Maria Mukhinaa, Denise Zicklerc, and Nancy Kleckner. 2022. “Sister Chromatids Separate during Anaphase in a Three-Stage Program as Directed by Interaxis Bridges | PNAS.” March 2, 2022. https://www.pnas.org/doi/full/10.1073/pnas.2123363119.
Nuez Veulens, Ania de la, Yoanna M. Álvarez Ginarte, Rolando E. Rodríguez Fernandez, Fabrice Leclerc, and Luis A. Montero Cabrera. 2022. “Prediction of Molecular Interactions and Physicochemical Properties Relevant for Vasopressin V2 Receptor Antagonism.” Journal of Molecular Modeling 28 (2): 31. https://doi.org/10.1007/s00894-021-05022-6.
Denecker, Thomas, and Gaëlle Lelandais. 2022. “Omics Analyses: How to Navigate Through a Constant DataData Deluge.” In Yeast Functional Genomics: Methods and Protocols, edited by Frédéric Devaux, 457–71. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2257-5_25.
Dos Santos, Matthieu, Stéphanie Backer, Frédéric Auradé, Matthew Man-Kin Wong, Maud Wurmser, Rémi Pierre, Francina Langa, et al. 2022. “A Fast Myosin Super Enhancer Dictates Muscle Fiber Phenotype through Competitive Interactions with Myosin Genes.” Nature Communications 13 (1): 1039. https://doi.org/10.1038/s41467-022-28666-1.
Esberard, Marick, Marc Hallier, Wenfeng Liu, Claire Morvan, Lionello Bossi, Nara Figueroa-Bossi, Brice Felden, and Philippe Bouloc. 2022. “6S RNA-Dependent Susceptibility to RNA Polymerase Inhibitors.” Antimicrobial Agents and Chemotherapy 0 (0): e02435-21. https://doi.org/10.1128/aac.02435-21.
Fekete, Erzsébet, Fruzsina Pénzes, Norbert Ág, Viktória Ág-Rácz, Erzsébet Sándor, Claudio Scazzocchio, Michel Flipphi, and Levente Karaffa. 2022. “Unique and Repeated Stwintrons (Spliceosomal Twin Introns) in the Hypoxylaceae.” Journal of Fungi 8 (4): 397. https://doi.org/10.3390/jof8040397.
Ferrad, Melissa, Nour Ghazzaui, Hussein Issaoui, Emilie Drouineau, Christelle Oblet, Tiffany Marchiol, Jeanne Cook-Moreau, and Yves Denizot. 2022. “Homozygous IMycCα Transgenic Mice as a Model of Plasma B-Cell Lymphomas.” Leukemia & Lymphoma 0 (0): 1–12. https://doi.org/10.1080/10428194.2022.2064989.
Gnan, Stefano, Melody Matelot, Marion Weiman, Olivier Arnaiz, Frederic Guerin, Linda Sperling, Mireille Betermier, Claude Thermes, Chun-Long Chen, and Sandra Duharcourt. 2022. “GC Content but Not Nucleosome Positioning Directly Contributes to Intron-Splicing Efficiency in Paramecium.” Genome Research, March, gr.276125.121. https://doi.org/10.1101/gr.276125.121.
Meinnel, Thierry. 2022. “Tracking N-Terminal Protein Processing from the Golgi to the Chromatophore of a Rhizarian Amoeba.” Plant Physiology, April, kiac173. https://doi.org/10.1093/plphys/kiac173.
Miró-Pina, Caridad, Olivia Charmant, Takayuki Kawaguchi, Daniel Holoch, Audrey Michaud, Isadora Cohen, Adeline Humbert, et al. 2022. “Paramecium Polycomb Repressive Complex 2 Physically Interacts with the Small RNA-Binding PIWI Protein to Repress Transposable Elements.” Developmental Cell, April. https://doi.org/10.1016/j.devcel.2022.03.014.
Owsian, Dawid, Julita Gruchota, Olivier Arnaiz, and Jacek K Nowak. 2022. “The Transient Spt4-Spt5 Complex as an Upstream Regulator of Non-Coding RNAs during Development.” Nucleic Acids Research, February, gkac106. https://doi.org/10.1093/nar/gkac106.
Papadopoulos, Chris, Nicolas Chevrollier, and Anne Lopes. 2022. “Exploring the Peptide Potential of Genomes.” In Computational Peptide Science, edited by Thomas Simonson, 2405:63–82. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-1855-4_3.
Platero-Rochart, Daniel, Roy González-Alemán, Erix W Hernández-Rodríguez, Fabrice Leclerc, Julio Caballero, and Luis Montero-Cabrera. 2022. “RCDPeaks: Memory-Efficient Density Peaks Clustering of Long Molecular Dynamics.” Bioinformatics, January, btac021. https://doi.org/10.1093/bioinformatics/btac021.
Poinsignon, Thibault, Mélina Gallopin, Jean-Michel Camadro, Pierre Poulain, and Gaëlle Lelandais. 2022. “Additional Insights into the Organization of Transcriptional Regulatory Modules Based on a 3D Model of the Saccharomyces Cerevisiae Genome.” BMC Research Notes 15 (1): 67. https://doi.org/10.1186/s13104-022-05940-5.
Riemenschneider, Henrick, Qiang Guo, Jakob Bader, Frédéric Frottin, Daniel Farny, Gernot Kleinberger, Christian Haass, et al. 2022. “Gel-like Inclusions of C-Terminal Fragments of TDP-43 Sequester Stalled Proteasomes in Neurons.” EMBO Reports.
Robert, Caroline, and Daniel Gautheret. 2022. “Multi-Omics Prediction in Melanoma Immunotherapy: A New Brick in the Wall.” Cancer Cell 40 (1): 14–16. https://doi.org/10.1016/j.ccell.2021.12.008.
Schweke, Hugo, Marie-Hélène Mucchielli, Nicolas Chevrollier, Simon Gosset, and Anne Lopes. 2022. “SURFMAP: A Software for Mapping in Two Dimensions Protein Surface Features.” Journal of Chemical Information and Modeling, March. https://doi.org/10.1021/acs.jcim.1c01269.
Sénécaut, Nicolas, Pierre Poulain, Laurent Lignières, Samuel Terrier, Véronique Legros, Guillaume Chevreux, Gaëlle Lelandais, and Jean-Michel Camadro. 2022. “Quantitative ProteomicsProteomics in YeastYeasts: From BSLIMBSLIM and Proteome DiscovererProteome Discoverer Outputs to Graphical Assessment of the Significance of Protein QuantificationQuantificationsScores.” In Yeast Functional Genomics: Methods and Protocols, edited by Frédéric Devaux, 275–92. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2257-5_16.
Thompson, Kyle, Lucas Bianchi, Francesca Rastelli, Florence Piron-Prunier, Sophie Ayciriex, Claude Besmond, Laurence Hubert, et al. 2022. “Biallelic Variants in TAMM41 Are Associated with Low Muscle Cardiolipin Levels, Leading to Neonatal Mitochondrial Disease.” Human Genetics and Genomics Advances 3 (2): 100097. https://doi.org/10.1016/j.xhgg.2022.100097.
Vigueras-Meneses, Liliana Guadalupe, Ximena Escalera-Fanjul, Mohammed El-Hafidi, Javier Montalvo-Arredondo, Nicolás Gomez-Hernandez, Maritrini Colón, Estefany Granados, et al. 2022. “Two Alpha Isopropylmalate Synthase Isozymes with Similar Kinetic Properties Are Extant in the Yeast Lachancea Kluyveri.” FEMS Yeast Research, March, foac016. https://doi.org/10.1093/femsyr/foac016.
Wang, Yunfeng, Haoliang Xue, Marine Aglave, Antoine Lainé, Mélina Gallopin, and Daniel Gautheret. 2022. “The Contribution of Uncharted RNA Sequences to Tumor Identity in Lung Adenocarcinoma.” NAR Cancer 4 (1): zcac001. https://doi.org/10.1093/narcan/zcac001.
Ye, Shixin, and Jean Lehmann. 2022. “Genetic Code Degeneracy Is Established by the Decoding Center of the Ribosome.” Nucleic Acids Research, March, gkac171. https://doi.org/10.1093/nar/gkac171.
“Gel-like Inclusions of C-Terminal Fragments of TDP-43 Sequester Stalled Proteasomes in Neurons.” 2022. EMBO Reports n/a (n/a): e53890. https://doi.org/10.15252/embr.202153890.
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