Microbiology Department


Publications in 2021
Benzerara, Karim, Elodie Duprat, Tristan Bitard-Feildel, Géraldine Caumes, Corinne Cassier-Chauvat, Franck Chauvat, Manuela Dezi, et al. 2022. “A New Gene Family Diagnostic for Intracellular Biomineralization of Amorphous Ca Carbonates by Cyanobacteria.” Genome Biology and Evolution 14 (3): evac026. https://doi.org/10.1093/gbe/evac026.
Blanc-Garin, Victoire, Théo Veaudor, Pierre Sétif, Brigitte Gontero, Stéphane D. Lemaire, Franck Chauvat, and Corinne Cassier-Chauvat. 2022. “First in Vivo Analysis of the Regulatory Protein CP12 of the Model Cyanobacterium Synechocystis PCC 6803: Biotechnological Implications.” Frontiers in Plant Science 13 (September). https://www.frontiersin.org/articles/10.3389/fpls.2022.999672.
Blanc-Garin, Victoire, Célia Chenebault, Encarnación Diaz-Santos, Marine Vincent, Jean-François Sassi, Corinne Cassier-Chauvat, and Franck Chauvat. 2022. “Exploring the Potential of the Model Cyanobacterium Synechocystis PCC 6803 for the Photosynthetic Production of Various High-Value Terpenes.” Biotechnology for Biofuels and Bioproducts 15 (1): 110. https://doi.org/10.1186/s13068-022-02211-0.
Blin, Pauline, Kévin Robic, Slimane Khayi, Jérémy Cigna, Euphrasie Munier, Pauline Dewaegeneire, Angélique Laurent, et al. 2022. “Pattern and Causes of the Establishment of the Invasive Bacterial Potato Pathogen Dickeya Solani and of the Maintenance of the Resident Pathogen D. Dianthicola.” Molecular Ecology 30 (2): 608–24. https://doi.org/https://doi.org/10.1111/mec.15751.
Bourgeois-Nicolaos, Nadège, Alexandre Raynor, Shivani Shankar-Aguilera, Eden Schwartz, Florence Doucet-Populaire, and Daniele De Luca. 2022. “Breast Milk in Neonate Oral Care: Oropharyngeal Effects in Extremely Preterm Infants.” European Journal of Pediatrics, November. https://doi.org/10.1007/s00431-022-04692-5.
Bouvard, J., C. Douarche, P. Mergaert, H. Auradou, and F. Moisy. 2022. “Direct Measurement of the Aerotactic Response in a Bacterial Suspension.” Physical Review E 106 (3): 034404. https://doi.org/10.1103/PhysRevE.106.034404.
Carlier, Mathieu, Emilie Lesur, Aurélie Baron, Aurélie Lemétais, Karine Guitot, Loïc Roupnel, Christiane Dietrich, et al. 2022. “Synthesis of Chemical Tools to Label the Mycomembrane of Corynebacteria Using Modified Iron(III) Chloride-Mediated Protection of Trehalose.” Organic & Biomolecular Chemistry, January. https://doi.org/10.1039/D2OB00107A.
Clara, Lejeune, Cornu David, Sago Laila, Redeker Virginie, and Virolle Marie-Joelle. 2022. “Comparative Proteomic Analysis of Transcriptional and Regulatory Proteins Abundances in S. Lividans and S. Coelicolor Suggests a Link between Various Stresses and Antibiotic Production.” International Journal of Molecular Sciences 23 (23): 14792. https://doi.org/10.3390/ijms232314792.
Cousin, Vladimir L., Ramy Charbel, Narjess Ghali, Clémence Marais, and Pierre Tissières. 2022. “Transcranial Doppler Ultrasonography in Children With Acute Liver Failure and Severe Hepatic Encephalopathy.” Pediatric Critical Care Medicine, April, 10.1097/PCC.0000000000002962. https://doi.org/10.1097/PCC.0000000000002962.
Cressey, Paul, Louis-Gabriel Bronstein, Rayene Benmahmoudi, Véronique Rosilio, Christophe Regeard, and Ali Makky. 2022. “Novel Liposome-like Assemblies Composed of Phospholipid-Porphyrin Conjugates with Photothermal and Photodynamic Activities against Bacterial Biofilms.” International Journal of Pharmaceutics 623 (July): 121915. https://doi.org/10.1016/j.ijpharm.2022.121915.
Da Cunha, Violette, Morgan Gaia, Hiroyuki Ogata, Olivier Jaillon, Tom O Delmont, and Patrick Forterre. 2022. “Giant Viruses Encode Actin-Related Proteins.” Molecular Biology and Evolution, February, msac022. https://doi.org/10.1093/molbev/msac022.
Sousa-d’Auria, Célia de, Florence Constantinesco, Nicolas Bayan, Patricia Constant, Maryelle Tropis, Mamadou Daffé, Marc Graille, and ChristineYR 2022 Houssin. 2022. “Cg1246, a New Player in Mycolic Acid Biosynthesis in Corynebacterium Glutamicum.” Microbiology 168 (4): 001171. https://doi.org/10.1099/mic.0.001171.
diCenzo, George C., Lisa Cangioli, Quentin Nicoud, Janis H. T. Cheng, Matthew J. Blow, Nicole Shapiro, Tanja Woyke, et al. 2022. “DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago Spp.” MSystems, January. https://doi.org/10.1128/mSystems.01092-21.
Ezinmegnon, Sem, Marine Mommert, Francois Bartolo, Gino Agbota, Sossou Darius, Valérie Briand, Marceline d’Almeida, et al. 2022. “Prospective Multicentre Study of Host Response Signatures in Neonatal Sepsis in Sub Saharan Africa.” Scientific Reports 12 (1): 21458. https://doi.org/10.1038/s41598-022-25892-x.
Forterre, Patrick. 2022. “Archaea: A Goldmine for Molecular Biologists and Evolutionists.” In Archaea: Methods and Protocols, edited by Sébastien Ferreira-Cerca, 1–21. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2445-6_1.
Forterre, Patrick, and Morgan Gaïa. 2022. “[Viruses and the evolution of modern eukaryotic cells].” Medecine Sciences: M/S 38 (12): 990–98. https://doi.org/10.1051/medsci/2022164.
Gorlas, A., T. Mariotte, L. Morey, C. Truong, S. Bernard, J.-M. Guigner, J. Oberto, et al. 2022. “Precipitation of Greigite and Pyrite Induced by Thermococcales: An Advantage to Live in Fe- and S-Rich Environments?” Environmental Microbiology 24 (2): 626–42. https://doi.org/10.1111/1462-2920.15915.
Guglielmini, Julien, Morgan Gaia, Violette Da Cunha, Alexis Criscuolo, Mart Krupovic, and Patrick Forterre. 2022. “Viral Origin of Eukaryotic Type IIA DNA Topoisomerases.” Virus Evolution 8 (2): veac097. https://doi.org/10.1093/ve/veac097.
Hogrel, Gaëlle, Laura Marino-Puertas, Sébastien Laurent, Ziad Ibrahim, Jacques Covès, Eric Girard, Frank Gabel, et al. 2022. “Characterization of a Small TRNA-Binding Protein That Interacts with the Archaeal Proteasome Complex.” Molecular Microbiology n/a (n/a). https://doi.org/10.1111/mmi.14948.
Hommais, Florence, and Olga Soutourina. 2022. “Editorial: Roles of Regulatory RNAs in Bacterial Pathogens.” Frontiers in Microbiology 13 (June). https://www.frontiersin.org/articles/10.3389/fmicb.2022.915005.
Jalalvand, Farshid, Yu-Ching Su, Guillaume Manat, Alexey Chernobrovkin, Mahendar Kadari, Sandra Jonsson, Martina Janousková, et al. 2022. “Protein Domain-Dependent Vesiculation of Lipoprotein A, a Protein That Is Important in Cell Wall Synthesis and Fitness of the Human Respiratory Pathogen Haemophilus Influenzae.” Frontiers in Cellular and Infection Microbiology 12 (October). https://www.frontiersin.org/articles/10.3389/fcimb.2022.984955.
Jang, Seonghan, Yu Matsuura, Kota Ishigami, Peter Mergaert, and Yoshitomo Kikuchi. 2022. “Symbiont Coordinates Stem Cell Proliferation, Apoptosis, and Morphogenesis of Gut Symbiotic Organ in the Stinkbug-Caballeronia Symbiosis.” Frontiers in Physiology 13: 1071987. https://doi.org/10.3389/fphys.2022.1071987.
Jukič, Marko, Rodolphe Auger, Victor Folcher, Matic Proj, Hélène Barreteau, Stanislav Gobec, and Thierry Touzé. 2022. “Towards Discovery of Inhibitors of the Undecaprenyl-Pyrophosphate Phosphatase BacA by Virtual High-Throughput Screening.” Computational and Structural Biotechnology Journal 20 (January): 2360–71. https://doi.org/10.1016/j.csbj.2022.05.010.
Khayi, Slimane, Kok-Gan Chan, and Denis Faure. 2022. “Patterns of Genomic Variations in the Plant Pathogen Dickeya Solani.” Microorganisms 10 (11): 2254. https://doi.org/10.3390/microorganisms10112254.
Kreis, Victor, and Olga Soutourina. 2022. “Clostridioides Difficile – Phage Relationship the RNA Way.” Current Opinion in Microbiology 66 (April): 1–10. https://doi.org/10.1016/j.mib.2021.11.012.
Lejeune, Clara, Laila Sago, David Cornu, Virginie Redeker, and Marie-Joelle Virolle. 2022. “A Proteomic Analysis Indicates That Oxidative Stress Is the Common Feature Triggering Antibiotic Production in Streptomyces Coelicolor and in the PptA Mutant of Streptomyces Lividans.” Frontiers in Microbiology 12 (March). https://www.frontiersin.org/article/10.3389/fmicb.2021.813993.
Maunier, Louise, Ramy Charbel, Virginie Lambert, Pierre Tissières, Simon Barreault, Mélissa Beggaz, Emre Belli, et al. 2022. “Anakinra in Pediatric Acute Fulminant Myocarditis.” Annals of Intensive Care 12 (1): 80. https://doi.org/10.1186/s13613-022-01054-0.
Miatello, Jordi, Anne-Claire Lukaszewicz, Michael J. Carter, Valérie Faivre, Stéphane Hua, Kim Z. Martinet, Christine Bourgeois, et al. 2022. “CIITA Promoter Polymorphism Impairs Monocytes HLA-DR Expression in Patients with Septic Shock.” IScience 25 (11). https://doi.org/10.1016/j.isci.2022.105291.
Mocchetti, Eva, Laura Morette, Guillermo Mulliert, Sandrine Mathiot, Benoît Guillot, François Dehez, Franck Chauvat, et al. 2022. “Biochemical and Structural Characterization of Chi-Class Glutathione Transferases: A Snapshot on the Glutathione Transferase Encoded by Sll0067 Gene in the Cyanobacterium Synechocystis Sp. Strain PCC 6803.” Biomolecules 12 (10): 1466. https://doi.org/10.3390/biom12101466.
Molinaro, Céline, Maëlle Bénéfice, Aurore Gorlas, Violette Da Cunha, Hadrien M. L. Robert, Ryan Catchpole, Laurent Gallais, Patrick Forterre, and Guillaume Baffou. 2022. “Life at High Temperature Observed in Vitro upon Laser Heating of Gold Nanoparticles.” Nature Communications 13 (1): 5342. https://doi.org/10.1038/s41467-022-33074-6.
Morin, Luc, Mark Hall, Daniela de Souza, Lu Guoping, Roberto Jabornisky, Nobuaki Shime, Suchitra Ranjit, et al. 2022. “The Current and Future State of Pediatric Sepsis Definitions: An International Survey.” Pediatrics 149 (6): e2021052565. https://doi.org/10.1542/peds.2021-052565.
Oberkampf, Marine, Audrey Hamiot, Pamela Altamirano-Silva, Paula Bellés-Sancho, Yannick D. N. Tremblay, Nicholas DiBenedetto, Roland Seifert, et al. 2022. “C-Di-AMP Signaling Is Required for Bile Salt Resistance, Osmotolerance, and Long-Term Host Colonization by Clostridioides Difficile.” Science Signaling 15 (750): eabn8171. https://doi.org/10.1126/scisignal.abn8171.
Ohbayashi, Tsubasa, Raynald Cossard, Gaëlle Lextrait, Takahiro Hosokawa, Vincent Lesieur, Kazutaka Takeshita, Kanako Tago, Peter Mergaert, and Yoshitomo Kikuchi. 2022. “Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus Occidentalis.” Microbes and Environments 37 (3): ME22042. https://doi.org/10.1264/jsme2.ME22042.
Oliveira Paiva, Ana M., Annemieke H. Friggen, Roxanne Douwes, Bert Wittekoek, and Wiep Klaas Smits. 2022. “Practical Observations on the Use of Fluorescent Reporter Systems in Clostridioides Difficile.” Antonie van Leeuwenhoek, January. https://doi.org/10.1007/s10482-021-01691-8.
Pinquier, Didier, Pascal Crépey, Pierre Tissières, Astrid Vabret, Jean-Christophe Roze, François Dubos, Fabienne Cahn-Sellem, Etienne Javouhey, Robert Cohen, and Catherine Weil-Olivier. 2022. “Preventing Respiratory Syncytial Virus in Children in France: A Narrative Review of the Importance of a Reinforced Partnership Between Parents, Healthcare Professionals, and Public Health Authorities.” Infectious Diseases and Therapy, December. https://doi.org/10.1007/s40121-022-00737-2.
Rietmeyer, Lauriane, Inès Li De La Sierra-Gallay, Guy Schepers, Delphine Dorchêne, Laura Iannazzo, Delphine Patin, Thierry Touzé, et al. 2022. “Amino-Acyl TXNA as Inhibitors or Amino Acid Donors in Peptide Synthesis.” Nucleic Acids Research, November, gkac1023. https://doi.org/10.1093/nar/gkac1023.
Santos, Luísa D. F., Laëtitia Caraty-Philippe, Emmanuelle Darbon, and Jean-Luc Pernodet. 2022. “Marker-Free Genome Engineering in Amycolatopsis Using the PSAM2 Site-Specific Recombination System.” Microorganisms 10 (4): 828. https://doi.org/10.3390/microorganisms10040828.
Seghezzi, Nicolas, Emmanuelle Darbon, Cécile Martel, Michelle David, Clara Lejeune, Catherine Esnault, and Marie-Joelle Virolle. 2022. “The Generation of an Artificial ATP Deficit Triggers Antibiotic Production in Streptomyces Lividans.” Antibiotics 11 (9): 1157. https://doi.org/10.3390/antibiotics11091157.
Soisig Steunou, Anne, Armelle Vigouroux, Magali Aumont-Nicaise, Stéphane Plancqueel, Alain Boussac, Soufian Ouchane, and Solange Moréra. 2022. “New Insights into the Mechanism of Iron Transport through the Bacterial Ftr-System Present in Pathogens.” The FEBS Journal n/a (n/a). https://doi.org/10.1111/febs.16476.
Takahashi, Diane T., Danièle Gadelle, Keli Agama, Evgeny Kiselev, Hongliang Zhang, Emilie Yab, Stephanie Petrella, Patrick Forterre, Yves Pommier, and Claudine Mayer. 2022. “Topoisomerase I (TOP1) Dynamics: Conformational Transition from Open to Closed States.” Nature Communications 13 (1): 59. https://doi.org/10.1038/s41467-021-27686-7.
Thery, Marin, Vladimir L. Cousin, Pierre Tissieres, Maxime Enault, and Luc Morin. 2022. “Multi-Organ Failure Caused by Lasagnas: A Case Report of Bacillus Cereus Food Poisoning.” Frontiers in Pediatrics 10 (September). https://www.frontiersin.org/articles/10.3389/fped.2022.978250.
Torres, Marta, Almudena Gonzalez-Mula, Delphine Naquin, and Denis Faure. 2022. “Construction of a Transposon Mutant Library in the Pathogen Agrobacterium Tumefaciens C58 and Identification of Genes Involved in Gall Niche Exploitation and Colonization.” In Microbial Environmental Genomics (MEG), edited by Francis Martin and Stephane Uroz, 209–26. Methods in Molecular Biology. New York, NY: Springer US. https://doi.org/10.1007/978-1-0716-2871-3_11.
Travin, Dmitrii Y., Dmitry Sutormin, Peter Mergaert, and Konstantin Severinov. 2022. “Complete Genome Sequences of Two Rhizobium Strains Producing Azol(in)e-Modified Antibiotics.” Microbiology Resource Announcements 0 (0): e00722-22. https://doi.org/10.1128/mra.00722-22.
Villain, Paul, Ryan Catchpole, Patrick Forterre, Jacques Oberto, Violette da Cunha, and Tamara Basta. 2022. “Expanded Dataset Reveals the Emergence and Evolution of DNA Gyrase in Archaea.” Molecular Biology and Evolution 39 (8): msac155. https://doi.org/10.1093/molbev/msac155.
Wallner, Adrian, Nicolas Busset, Joy Lachat, Ludivine Guigard, Eoghan King, Isabelle Rimbault, Peter Mergaert, Gilles Béna, and Lionel Moulin. 2022. “Differential Genetic Strategies of Burkholderia Vietnamiensis and Paraburkholderia Kururiensis for Root Colonization of Oryza Sativa Subsp. Japonica and O. Sativa Subsp. Indica, as Revealed by Transposon Mutagenesis Sequencing.” Applied and Environmental Microbiology 88 (14): e00642-22. https://doi.org/10.1128/aem.00642-22.
Wan, Yi, Chengli Zong, Xiangpeng Li, Aimin Wang, Yan Li, Tao Yang, Qing Bao, et al. 2022. “New Insights for Biosensing: Lessons from Microbial Defense Systems.” Chemical Reviews, March. https://doi.org/10.1021/acs.chemrev.1c01063.
Wan, Hongwei, Raja Ben Othman, Laurent Le Corre, Mélanie Poinsot, Martin Oliver, Ana Amoroso, Bernard Joris, et al. 2022. “New MraYAA Inhibitors with an Aminoribosyl Uridine Structure and an Oxadiazole.” Antibiotics 11 (9): 1189. https://doi.org/10.3390/antibiotics11091189.
Werten, Sebastiaan, Paul Waack, Gottfried J. Palm, Marie-Joëlle Virolle, and Winfried Hinrichs. 2022. “Crystal Structures of Free and Ligand-Bound Forms of the TetR/AcrR-like Regulator SCO3201 from Streptomyces Coelicolor Suggest a Novel Allosteric Mechanism.” The FEBS Journal n/a (n/a). https://doi.org/10.1111/febs.16606.
Yokoyama, Hideshi, Nanami Kamei, Keijiro Konishi, Kodai Hara, Yoshinobu Ishikawa, Ikuo Matsui, Patrick Forterre, and Hiroshi Hashimoto. 2022. “Structural Basis for Peptide Recognition by Archaeal Oligopeptide Permease A.” Proteins: Structure, Function, and Bioinformatics n/a (n/a). https://doi.org/10.1002/prot.26324.
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