Genomics, Structure and Translation

Karri, Sabrina, David Cornu, Claudia Serot, Lynda Biri, Aurélie Hatton, Elise Dréanot, Camille Rullaud, et al. 2024. “TLN468 Changes the Pattern of TRNA Used to Read through Premature Termination Codons in CFTR.” Journal of Cystic Fibrosis: Official Journal of the European Cystic Fibrosis Society, August, S1569-1993(24)00802-6. https://doi.org/10.1016/j.jcf.2024.07.017.

Andjus, Sara, Ugo Szachnowski, Nicolas Vogt, Stamatia Gioftsidi, Isabelle Hatin, David Cornu, Chris Papadopoulos, et al. 2024. “Pervasive Translation of Xrn1-Sensitive Unstable Long Non-Coding RNAs in Yeast.” RNA (New York, N.Y.), March, rna.079903.123. https://doi.org/10.1261/rna.079903.123.

Pranke, Iwona M., Jessica Varilh, Aurélie Hatton, Caroline Faucon, Emmanuelle Girodon, Elise Dreano, Benoit Chevalier, et al. 2022. “The U UGA C Sequence Provides a Favorable Context to ELX-02 Induced CFTR Readthrough.” Journal of Cystic Fibrosis 0 (0). https://doi.org/10.1016/j.jcf.2022.10.010.

Gosset, Simon, Annie Glatigny, Mélina Gallopin, Zhou Yi, Marion Salé, and Marie-Hélène Mucchielli-Giorgi. 2022. “APPINetwork: An R Package for Building and Computational Analysis of Protein–Protein Interaction Networks.” PeerJ 10 (November):e14204. https://doi.org/10.7717/peerj.14204.

Bidou, Laure, Olivier Bugaud, Goulven Merer, Matthieu Coupet, Isabelle Hatin, Egor Chirkin, Sabrina Karri, et al. 2022. “2-Guanidino-Quinazoline Promotes the Readthrough of Nonsense Mutations Underlying Human Genetic Diseases.” Proceedings of the National Academy of Sciences 119 (35): e2122004119. https://doi.org/10.1073/pnas.2122004119.

Papadopoulos, Chris, Isabelle Callebaut, Jean-Christophe Gelly, Isabelle Hatin, Olivier Namy, Maxime Renard, Olivier Lespinet, and Anne Lopes. 2021. “Intergenic ORFs as Elementary Structural Modules of de Novo Gene Birth and Protein Evolution.” Genome Research, November. https://doi.org/10.1101/gr.275638.121.

Valadon, Charlène, and Olivier Namy. 2021. “The Importance of the Epi-Transcriptome in Translation Fidelity.” Non-Coding RNA 7 (3): 51. https://doi.org/10.3390/ncrna7030051.

Fabret, Celine, and Olivier Namy. 2021. “Translational Accuracy of a Tethered Ribosome.” Nucleic Acids Research 49 (9): 5308–18. https://doi.org/10.1093/nar/gkab259.

Beznosková, Petra, Laure Bidou, Olivier Namy, and Leoš Shivaya Valášek. 2021. “Increased Expression of Tryptophan and Tyrosine TRNAs Elevates Stop Codon Readthrough of Reporter Systems in Human Cell Lines.” Nucleic Acids Research 49 (9): 5202–15. https://doi.org/10.1093/nar/gkab315.

Boussaid, Ismael, Salomé Le Goff, Célia Floquet, Emilie-Fleur Gautier, Anna Raimbault, Pierre-Julien Viailly, Dina Al Dulaimi, et al. 2021. “Integrated Analyses of Translatome and Proteome Identify the Rules of Translation Selectivity in RPS14-Deficient Cells.” Haematologica 106 (3): 746–58. https://doi.org/10.3324/haematol.2019.239970.

Le Goff, Salomé, Ismael Boussaid, Celia Floquet, Anna Raimbault, Isabelle Hatin, Charlotte Andrieu-Soler, Mohammad Salma, et al. 2021. “P53 Activation during Ribosome Biogenesis Regulates Normal Erythroid Differentiation.” Blood 137 (1): 89–102. https://doi.org/10.1182/blood.2019003439.

Amzal, Rachida, Alice Thébaut, Martine Lapalus, Marion Almes, Brigitte Grosse, Elodie Mareux, Mauricette Collado-Hilly, et al. 2020. “Pharmacological Premature Termination Codon Readthrough of ABCB11 in Bile Salt Export Pump Deficiency: An in Vitro Study.” Hepatology (Baltimore, Md.), July. https://doi.org/10.1002/hep.31476.

Aliouat, Affaf, Isabelle Hatin, Pierre Bertin, Pauline François, Vérène Stierlé, Olivier Namy, Samia Salhi, and Olivier Jean-Jean. 2019. “Divergent Effects of Translation Termination Factor ERF3A and Nonsense-Mediated MRNA Decay Factor UPF1 on the Expression of UORF Carrying MRNAs and Ribosome Protein Genes.” RNA Biology 17 (2): 227–39. https://doi.org/10.1080/15476286.2019.1674595.

Durand, Eleonore, Isabelle Gagnon-Arsenault, Johan Hallin, Isabelle Hatin, Alexandre K. Dube, Lou Nielly-Thibault, Olivier Namy, and Christian R. Landry. 2019. “Turnover of Ribosome-Associated Transcripts from de Novo ORFs Produces Gene-like Characteristics Available for de Novo Gene Emergence in Wild Yeast Populations.” Genome Research 29 (6): 932–43. https://doi.org/10.1101/gr.239822.118.

Brito, Elcia Margareth Souza, Víctor Manuel Romero-Núñez, César Augusto Caretta, Pierre Bertin, Julio César Valerdi-Negreros, Rémy Guyoneaud, and Marisol Goñi-Urriza. 2019. “The Bacterial Diversity on Steam Vents from Paricutín and Sapichu Volcanoes.” Extremophiles: Life Under Extreme Conditions 23 (February):249–63. https://doi.org/10.1007/s00792-019-01078-8.

Briand, William, Ousmane Dao, Guillaume Garnier, Raphaël Guegan, Britany Marta, Clémence Maupu, Julie Miesch, et al. 2018. “Dégradation d’un anticancéreux dans les eaux usées - Une médaille d’or pour l’équipe GO Paris-Saclay.” Medecine Sciences: M/S 34 (12): 1111–14. https://doi.org/10.1051/medsci/2018304.

Planchard, Noelya, Pierre Bertin, Martine Quadrado, Céline Dargel-Graffin, Isabelle Hatin, Olivier Namy, and Hakim Mireau. 2018. “The Translational Landscape of Arabidopsis Mitochondria.” Nucleic Acids Research 46 (12): 6218–28. https://doi.org/10.1093/nar/gky489.

Bouffard, Stéphanie, Emilie Dambroise, Alessandro Brombin, Sylvain Lempereur, Isabelle Hatin, Matthieu Simion, Raphaël Corre, Franck Bourrat, Jean-Stéphane Joly, and Françoise Jamen. 2018. “Fibrillarin Is Essential for S-Phase Progression and Neuronal Differentiation in Zebrafish Dorsal Midbrain and Retina.” Developmental Biology 437 (1): 1–16. https://doi.org/10.1016/j.ydbio.2018.02.006.

Blanchet, Sandra, David Cornu, Isabelle Hatin, Henri Grosjean, Pierre Bertin, and Olivier Namy. 2018. “Deciphering the Reading of the Genetic Code by Near-Cognate TRNA.” Proceedings of the National Academy of Sciences 115 (12): 3018–23. https://doi.org/10.1073/pnas.1715578115.

Erales, Jenny, Virginie Marchand, Baptiste Panthu, Sandra Gillot, Stéphane Belin, Sandra E. Ghayad, Maxime Garcia, et al. 2017. “Evidence for RRNA 2′-O-Methylation Plasticity: Control of Intrinsic Translational Capabilities of Human Ribosomes.” Proceedings of the National Academy of Sciences 114 (49): 12934–39. https://doi.org/10.1073/pnas.1707674114.

Bugaud, Olivier, Nathalie Barbier, Hélène Chommy, Nicolas Fiszman, Antoine Le Gall, David Dulin, Matthieu Saguy, Nathalie Westbrook, Karen Perronet, and Olivier Namy. 2017. “Kinetics of CrPV and HCV IRES-Mediated Eukaryotic Translation Using Single-Molecule Fluorescence Microscopy.” RNA 23 (11): 1626–35. https://doi.org/10.1261/rna.061523.117.

Bidou, Laure, Olivier Bugaud, Valery Belakhov, Timor Baasov, and Olivier Namy. 2017. “Characterization of New-Generation Aminoglycoside Promoting Premature Termination Codon Readthrough in Cancer Cells.” RNA Biology 14 (3): 378–88. https://doi.org/10.1080/15476286.2017.1285480.

Sermet-Gaudelus, Isabelle, and Olivier Namy. 2016. “New Pharmacological Approaches to Treat Patients with Cystic Fibrosis with Nonsense Mutations.” American Journal of Respiratory and Critical Care Medicine 194 (9): 1042–44. https://doi.org/10.1164/rccm.201605-1021ED.

Thiaville, Patrick C., Rachel Legendre, Diego Rojas-Benítez, Agnès Baudin-Baillieu, Isabelle Hatin, Guilhem Chalancon, Alvaro Glavic, Olivier Namy, and Valérie de Crécy-Lagard. 2016. “Global Translational Impacts of the Loss of the TRNA Modification t(6)A in Yeast.” Microbial Cell (Graz, Austria) 3 (1): 29–45. https://doi.org/10.15698/mic2016.01.473.

Baudin-Baillieu, Agnès, Isabelle Hatin, Rachel Legendre, and Olivier Namy. 2016. “Translation Analysis at the Genome Scale by Ribosome Profiling.” Methods in Molecular Biology (Clifton, N.J.) 1361:105–24. https://doi.org/10.1007/978-1-4939-3079-1_7.

Legendre, Rachel, Agnès Baudin-Baillieu, Isabelle Hatin, and Olivier Namy. 2015. “RiboTools: A Galaxy Toolbox for Qualitative Ribosome Profiling Analysis.” Bioinformatics (Oxford, England) 31 (15): 2586–88. https://doi.org/10.1093/bioinformatics/btv174.

Blanchet, Sandra, Michelle Rowe, Tobias Von der Haar, Céline Fabret, Stéphane Demais, Mark J. Howard, and Olivier Namy. 2015. “New Insights into Stop Codon Recognition by ERF1.” Nucleic Acids Research 43 (6): 3298–3308. https://doi.org/10.1093/nar/gkv154.